PK23380.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK23380.1 T247393_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.791 0.791
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.791 0.791
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.791 0.791
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.761 0.761
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.761 0.761
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.746 0.746
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.746 0.746
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK23380.1 LOB 8 75

Links

Other LOB family TFs
Other Cannabis sativa TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CaO19.12706 Candida albicans CaO19.12706 N 0.000
CaO19.5241 Candida albicans CaO19.5241 N 0.000
CD36_11470 Candida dubliniensis CD36_11470 N 0.000
DEHA2G09900g Debaryomyces hansenii DEHA2G09900g N 0.000
estExt_fgenesh1_pg.C_chr_1.20339 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20339 N 0.000
G210_5742 Candida maltosa G210_5742 N 0.000
GNLVRS01_PISO0E07066g Millerozyma farinosa GNLVRS01_PISO0E07066g N 0.000
GNLVRS01_PISO0F08409g Millerozyma farinosa GNLVRS01_PISO0F08409g N 0.000
PICST_66693 Scheffersomyces stipitis PICST_66693 N 0.000
SPAPADRAFT_51080 Spathaspora passalidarum SPAPADRAFT_51080 N 0.000