Pavir.J24246 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.J24246 T247245_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.717 0.717
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.717 0.717
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J24246.1.p LOB 15 114

Links

Other LOB family TFs
Other Panicum virgatum TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.990
Si037727m.g Setaria italica Si037727m.g I 0.990
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.980
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.980
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.922
OBART03G03820 Oryza barthii OBART03G03820 I 0.922
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.922
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.922
OB03G13880 Oryza brachyantha OB03G13880 I 0.919
OPUNC03G03510 Oryza punctata OPUNC03G03510 I 0.909
OS03G0149000 Oryza sativa OS03G0149000 I 0.909
ORGLA03G0035800 Oryza glaberrima ORGLA03G0035800 I 0.909
BGIOSGA011866 Oryza indica BGIOSGA011866 I 0.909
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.889
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.889
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.889
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.879
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.869
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.869
OLONG_020840 Oryza longistaminata OLONG_020840 N 0.859
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N 0.859
OMERI07G01670 Oryza meridionalis OMERI07G01670 N 0.859
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.771
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.747
OB02G44330 Oryza brachyantha OB02G44330 I 0.747
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.747
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.747
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.747
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.747
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.747
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.747
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.747
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.747
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.747
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.747
Si019578m.g Setaria italica Si019578m.g I 0.747
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.744
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.737
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.737
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.737
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.737
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.737
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.737
OS03G0149100 Oryza sativa OS03G0149100 I 0.737
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.737
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.737
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.737
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.737
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.737
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.737
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.737
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.737
Si040019m.g Setaria italica Si040019m.g I 0.737
OS02G0820500 Oryza sativa OS02G0820500 I 0.737
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.737
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.737
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.737
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.737
OB03G13890 Oryza brachyantha OB03G13890 I 0.737
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.737
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.737
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.737
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.737
OBART03G03830 Oryza barthii OBART03G03830 I 0.737
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.737
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.737
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.727
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.727
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.727
OS08G0563400 Oryza sativa OS08G0563400 I 0.727
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.727
Bo8g092560 Brassica oleracea Bo8g092560 I 0.727
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.727
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.727
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.727
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.727
OB08G30680 Oryza brachyantha OB08G30680 I 0.727
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.727
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.727
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.727
OBART08G23860 Oryza barthii OBART08G23860 I 0.727
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.727
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.719
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.719
Bo4g191530 Brassica oleracea Bo4g191530 I 0.717
Bra004693 Brassica rapa Bra004693 I 0.717
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.717
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.717
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.717
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.717
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.717
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.717
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.717
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.717
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.717
Bo4g016000 Brassica oleracea Bo4g016000 I 0.717
Cla006088 Citrullus lanatus Cla006088 I 0.717
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.717
Si015156m.g Setaria italica Si015156m.g I 0.717
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.717
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.717
F775_02052 Aegilops tauschii F775_02052 I 0.717
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.717
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.717
LBD16 Arabidopsis thaliana AT2G42430 D 0.717
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.717
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.717
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.717
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.717
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.717
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.717
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.717
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.717
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.707
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.707
LBD29 Arabidopsis thaliana AT3G58190 I 0.707
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.707
Bra014581 Brassica rapa Bra014581 I 0.707
F775_22967 Aegilops tauschii F775_22967 I 0.707
Bra016877 Brassica rapa Bra016877 I 0.707
Bra016876 Brassica rapa Bra016876 N 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.707
Bo4g108600 Brassica oleracea Bo4g108600 I 0.707
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.707
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
Pm020629 Prunus mume Pm020629 I 0.707
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.707
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
Ca_12214 Cicer arietinum Ca_12214 I 0.707
OBART02G37570 Oryza barthii OBART02G37570 I 0.701