Thhalv10001791m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10001791m.g T247329_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
1.000 1.000
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
1.000 1.000
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.828 0.828
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.828 0.828
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.747 0.747
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.747 0.747
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.747 0.747
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.747 0.747
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10001791m LOB 36 135

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

360 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RO3G_07543 Rhizopus oryzae RO3G_07543 I 0.000
PGTG_12120 Puccinia graminis PGTG_12120 I 0.000
PGTG_10028 Puccinia graminis PGTG_10028 I 0.000
MELLADRAFT_85039 Melampsora laricipopulina MELLADRAFT_85039 I 0.000
RO3G_09728 Rhizopus oryzae RO3G_09728 I 0.000
COCC4DRAFT_59869 Bipolaris maydis COCC4DRAFT_59869 N 0.000
PV09_06039 Verruconis gallopava PV09_06039 N 0.000
PVAR5_2976 Byssochlamys spectabilis PVAR5_2976 N 0.000
SETTUDRAFT_168734 Setosphaeria turcica SETTUDRAFT_168734 N 0.000
SNOG_01716 Phaeosphaeria nodorum SNOG_01716 N 0.000
UCRNP2_5474 Neofusicoccum parvum UCRNP2_5474 N 0.000
W97_04667 Coniosporium apollinis W97_04667 N 0.000
estExt_fgenesh1_pg.C_150217 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_150217 N 0.000
PTT_13179 Pyrenophora teres PTT_13179 N 0.000
PTRG_02598 Pyrenophora triticirepentis PTRG_02598 N 0.000
SNOG_01716 Stagonospora nodorum SNOG_01716 N 0.000
PABG_05916 Paracoccidioides brasiliensis PABG_05916 N 0.000
BDDG_03827 Blastomyces dermatitidis BDDG_03827 N 0.000
LEMA_P000900.1 Leptosphaeria maculans LEMA_P000900.1 N 0.000
COCSADRAFT_342303 Bipolaris sorokiniana COCSADRAFT_342303 N 0.000
COCMIDRAFT_6607 Bipolaris oryzae COCMIDRAFT_6607 N 0.000
COCCADRAFT_2680 Bipolaris zeicola COCCADRAFT_2680 N 0.000
AB06937.1 Alternaria brassicicola AB06937.1 N 0.000