AT3G24490 (Arabidopsis thaliana)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AT3G24490 T247884_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G24490.1 MADF 101 176

Links

Other MADF family TFs
Other Arabidopsis thaliana TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_302996.1 Arabidopsis lyrata scaffold_302996.1 N 0.969
Bostr.19424s0179 Boechera stricta Bostr.19424s0179 N 0.968
Thhalv10002883m.g Eutrema salsugineum Thhalv10002883m.g N 0.961
Bo3g083280 Brassica oleracea Bo3g083280 N 0.940
Bra001951 Brassica rapa Bra001951 N 0.938
orange1.1g019823m.g Citrus sinensis orange1.1g019823m.g N 0.885
Ciclev10008866m.g Citrus clementina Ciclev10008866m.g N 0.885
TCM_037914 Theobroma cacao TCM_037914 N 0.884
Pm027397 Prunus mume Pm027397 N 0.852
evm.TU.supercontig_23.117 Carica papaya evm.TU.supercontig_23.117 N 0.844
gene02091-v1.0-hybrid Fragaria vesca gene02091-v1.0-hybrid N 0.842