CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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29576.m000223
(
Ricinus communis
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
29576.m000223
T250438_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.841
0.662
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.841
0.662
AT1G76880
M06970_2.00
Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY
Dap-seq
OMalley et al.(2016)
AT1G76880_col_a
0.827
0.713
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
29576.m000223
MADF
86
155
DMDAVFRDSSLKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHKRTKDGRTGKSEGKTYRFFDQLEA
29576.m000223
MADF
465
536
TSLDSKYLQNGPKGPLWEEISAGMQRLGYSRSAKRCKEKWENINKYFKKVKESNKKRSEDSKTCPYFHQLDA
Links
Other
MADF
family TFs
Other
Ricinus communis
TFs
194 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy