Carubv10015256m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10015256m.g T250626_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN

NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
0.967 0.959
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND

HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
0.967 0.959
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD

HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
0.967 0.959
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN

NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.944 0.811
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015256m MADF 163 244

Links

Other MADF family TFs
Other Capsella rubella TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g05839 Acanthocheilonema viteae nAv.1.0.1.g05839 N 0.000
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N 0.000
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N 0.000
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N 0.000
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N 0.000
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N 0.000
ASIM_0000224701 Anisakis simplex ASIM_0000224701 N 0.000
AFUN005717 Anopheles funestus AFUN005717 N 0.000
ASU_00939 Ascaris suum ASU_00939 N 0.000
ENSAMXG00000016832 Astyanax mexicanus ENSAMXG00000016832 N 0.000
BGLB013626 Biomphalaria glabrata BGLB013626 N 0.000
fgenesh2_pg.scaffold_1690000001 Branchiostoma floridae fgenesh2_pg.scaffold_1690000001 N 0.000
Bm2393 Brugia malayi Bm2393 N 0.000
Bm9369 Brugia malayi Bm9369 N 0.000
Bm7765 Brugia malayi Bm7765 N 0.000
BTMF_0001523401 Brugia timori BTMF_0001523401 N 0.000
BTMF_0001478401 Brugia timori BTMF_0001478401 N 0.000
BXY_0575000 Bursaphelenchus xylophilus BXY_0575000 N 0.000
CBN07735 Caenorhabditis brenneri CBN07735 N 0.000
CBN15844 Caenorhabditis brenneri CBN15844 N 0.000
CBN31697 Caenorhabditis brenneri CBN31697 N 0.000
CBG18873 Caenorhabditis briggsae CBG18873 N 0.000
CBG11867 Caenorhabditis briggsae CBG11867 N 0.000
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.000
CJA30740 Caenorhabditis japonica CJA30740 N 0.000
CJA17191 Caenorhabditis japonica CJA17191 N 0.000
CJA03316 Caenorhabditis japonica CJA03316 N 0.000
CRE28315 Caenorhabditis remanei CRE28315 N 0.000
CRE14258 Caenorhabditis remanei CRE14258 N 0.000
ENSCING00000002208 Ciona intestinalis ENSCING00000002208 N 0.000
CGI_10018256 Crassostrea gigas CGI_10018256 N 0.000
CpipJ_CPIJ016883 Culex pipiens CpipJ_CPIJ016883 N 0.000
CPIJ016883 Culex quinquefasciatus CPIJ016883 N 0.000
pbrm1l Danio rerio ENSDARG00000077038 N 0.000
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N 0.000
DICVIV_02621 Dictyocaulus viviparus DICVIV_02621 N 0.000
nDi.2.2.2.g06671 Dirofilaria immitis nDi.2.2.2.g06671 N 0.000
nDi.2.2.2.g10298 Dirofilaria immitis nDi.2.2.2.g10298 N 0.000
nDi.2.2.2.g01867 Dirofilaria immitis nDi.2.2.2.g01867 N 0.000
DME_0000632401 Dracunculus medinensis DME_0000632401 N 0.000
EEL_0000724001 Elaeophora elaphi EEL_0000724001 N 0.000
GPLIN_000839700 Globodera pallida GPLIN_000839700 N 0.000
GPUH_0001659301 Gongylonema pulchrum GPUH_0001659301 N 0.000
HCOI00076900 Haemonchus contortus HCOI00076900 N 0.000
HCOI01215700 Haemonchus contortus HCOI01215700 N 0.000
Hba_16915 Heterorhabditis bacteriophora Hba_16915 I 0.000
ISCW005293 Ixodes scapularis ISCW005293 N 0.000
nLs.2.1.2.g08566 Litomosoides sigmodontis nLs.2.1.2.g08566 N 0.000
nLs.2.1.2.g07200 Litomosoides sigmodontis nLs.2.1.2.g07200 N 0.000
LOAG_15875 Loa loa LOAG_15875 N 0.000
LOAG_11340 Loa loa LOAG_11340 N 0.000
LotgiG176647 Lottia gigantea LotgiG176647 N 0.000
LotgiG144192 Lottia gigantea LotgiG144192 N 0.000
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.000
genemark-nMf.1.1.scaf03789-processed-gene-0.2 Meloidogyne floridensis genemark-nMf.1.1.scaf03789-processed-gene-0.2 N 0.000
MhA1_Contig1224.frz3.gene1 Meloidogyne hapla MhA1_Contig1224.frz3.gene1 N 0.000
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N 0.000
Minc06622 Meloidogyne incognita Minc06622 N 0.000
Minc18174 Meloidogyne incognita Minc18174 N 0.000
NECAME_01599 Necator americanus NECAME_01599 N 0.000
NECAME_06830 Necator americanus NECAME_06830 N 0.000
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N 0.000
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.000
OFLC_0000194401 Onchocerca flexuosa OFLC_0000194401 N 0.000
nOo.2.0.1.g07918 Onchocerca ochengi nOo.2.0.1.g07918 N 0.000
nOo.2.0.1.g03638 Onchocerca ochengi nOo.2.0.1.g03638 N 0.000
WBGene00238178 Onchocerca volvulus WBGene00238178 N 0.000
WBGene00239172 Onchocerca volvulus WBGene00239172 N 0.000
ENSONIG00000004158 Oreochromis niloticus ENSONIG00000004158 N 0.000
ENSORLG00000019807 Oryzias latipes ENSORLG00000019807 N 0.000
ENSORLG00000018988 Oryzias latipes ENSORLG00000018988 N 0.000
ENSORLG00000001101 Oryzias latipes ENSORLG00000001101 N 0.000
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N 0.000
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.000
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.000
ENSPFOG00000017300 Poecilia formosa ENSPFOG00000017300 N 0.000
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N 0.000
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N 0.000
Sakowv30031460m.g Saccoglossus kowalevskii Sakowv30031460m.g N 0.000
L596_g8243 Steinernema carpocapsae L596_g8243 N 0.000
L596_g21045 Steinernema carpocapsae L596_g21045 I 0.000
L889_g13125 Steinernema feltiae L889_g13125 N 0.000
L893_g19156 Steinernema glaseri L893_g19156 N 0.000
L898_g14011 Steinernema monticolum L898_g14011 N 0.000
L892_g19322 Steinernema scapterisci L892_g19322 N 0.000
L892_g13433 Steinernema scapterisci L892_g13433 I 0.000
SMAR009325 Strigamia maritima SMAR009325 N 0.000
SPU_025140 Strongylocentrotus purpuratus SPU_025140 N 0.000
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.000
SSTP_0001127200 Strongyloides stercoralis SSTP_0001127200 N 0.000
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.000
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.000
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N 0.000
SVUK_0000686401 Strongylus vulgaris SVUK_0000686401 N 0.000
SMUV_0000135001 Syphacia muris SMUV_0000135001 N 0.000
pbrm1l Takifugu rubripes ENSTRUG00000005335 N 0.000
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N 0.000
tetur31g01070 Tetranychus urticae tetur31g01070 N 0.000
tetur31g00660 Tetranychus urticae tetur31g00660 N 0.000
tetur21g01330 Tetranychus urticae tetur21g01330 N 0.000
tetur31g00840 Tetranychus urticae tetur31g00840 N 0.000
pbrm1l Tetraodon nigroviridis ENSTNIG00000014731 N 0.000
TCLT_0000189901 Thelazia callipaeda TCLT_0000189901 N 0.000
D917_05046 Trichinella nativa D917_05046 N 0.000
D917_05048 Trichinella nativa D917_05048 N 0.000
EFV56090 Trichinella spiralis EFV56090 N 0.000
EFV56095 Trichinella spiralis EFV56095 N 0.000
EFV52201 Trichinella spiralis EFV52201 N 0.000
TMUE_s0089001400 Trichuris muris TMUE_s0089001400 N 0.000
TMUE_s0227000300 Trichuris muris TMUE_s0227000300 N 0.000
D918_05288 Trichuris suis D918_05288 N 0.000
D918_06015 Trichuris suis D918_06015 N 0.000
WUBG_03167 Wuchereria bancrofti WUBG_03167 N 0.000
WUBG_00348 Wuchereria bancrofti WUBG_00348 N 0.000
ENSXMAG00000016160 Xiphophorus maculatus ENSXMAG00000016160 N 0.000