CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SVUK_0001242901
(
Strongylus vulgaris
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
SVUK_0001242901
T252595_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
madf-5
M02276_2.00
Caenorhabditis elegans
NNDCCGGHNN
NNDCCGGHNN
PBM
Weirauch et al.(2014)
pTH9076
0.857
0.747
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SVUK_0001242901-mRNA-1
MADF
11
93
LIAEVKKYPCLYNHAKRGSGDTLERMRIWEKIAAAVDSNCSGDFAKKRWLQLRDRYRKELKTAIKQNFVAPVRWCYFSHLSWL
Links
Other
MADF
family TFs
Other
Strongylus vulgaris
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NECAME_12942
Necator americanus
NECAME_12942
I
0.971
ANCCAN_12875
Ancylostoma caninum
ANCCAN_12875
I
0.971
CGOC_0000285301
Cylicostephanus goldi
CGOC_0000285301
I
0.970
OESDEN_17669
Oesophagostomum dentatum
OESDEN_17669
I
0.968
TELCIR_10199
Teladorsagia circumcincta
TELCIR_10199
I
0.965
HPLM_0001751701
Haemonchus placei
HPLM_0001751701
I
0.961
OESDEN_24138
Oesophagostomum dentatum
OESDEN_24138
I
0.961
HCOI02134900
Haemonchus contortus
HCOI02134900
I
0.961
DICVIV_11545
Dictyocaulus viviparus
DICVIV_11545
I
0.956
ACAC_0000281001
Angiostrongylus cantonensis
ACAC_0000281001
I
0.950
madf-5
Caenorhabditis elegans
WBGene00007242
D
0.857
CRE26355
Caenorhabditis remanei
CRE26355
I
0.857
CBN17510
Caenorhabditis brenneri
CBN17510
I
0.857
CBN31453
Caenorhabditis brenneri
CBN31453
I
0.857
CBG20858
Caenorhabditis briggsae
CBG20858
I
0.857
CJA18506
Caenorhabditis japonica
CJA18506
I
0.857