AMTR_s00010p00264750 (Amborella trichopoda)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AMTR_s00010p00264750 T252799_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM94528 MADS box 10 55

Links

Other MADS box family TFs
Other Amborella trichopoda TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_13266 Aegilops tauschii F775_13266 I 0.848
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.957
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.739
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.783
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.761
AGL65 Arabidopsis thaliana AT1G18750 D 0.729
AGL94 Arabidopsis thaliana AT1G69540 N 0.739
AGL30 Arabidopsis thaliana AT2G03060 I 0.804
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.804
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.729
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.739
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.804
Bo9g072860 Brassica oleracea Bo9g072860 N 0.783
Bo8g068060 Brassica oleracea Bo8g068060 I 0.826
Bo7g080890 Brassica oleracea Bo7g080890 I 0.761
Bo8g104060 Brassica oleracea Bo8g104060 I 0.826
Bra031049 Brassica rapa Bra031049 I 0.826
Bra016544 Brassica rapa Bra016544 I 0.826
Bra017404 Brassica rapa Bra017404 I 0.761
Bra024792 Brassica rapa Bra024792 I 0.761
Bra025685 Brassica rapa Bra025685 I 0.826
PK03147.1 Cannabis sativa PK03147.1 I 0.826
PK21701.1 Cannabis sativa PK21701.1 I 0.792
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.804
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.739
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.739
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.804
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.739
Ca_18082 Cicer arietinum Ca_18082 I 0.783
Ca_16376 Cicer arietinum Ca_16376 I 0.804
Cla010361 Citrullus lanatus Cla010361 I 0.826
Cla018884 Citrullus lanatus Cla018884 I 0.804
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.792
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.826
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.826
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.792
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.804
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.804
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.771
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.761
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.783
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.783
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.804
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.761
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.783
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.739
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.745
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.739
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.771
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.771
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.826
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.804
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.826
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.761
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.826
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.812
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.739
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.848
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.783
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.804
MDP0000146231 Malus domestica MDP0000146231 I 0.804
MDP0000146415 Malus domestica MDP0000146415 I 0.822
MDP0000919323 Malus domestica MDP0000919323 I 0.822
MDP0000773068 Malus domestica MDP0000773068 I 0.822
MDP0000193129 Malus domestica MDP0000193129 I 0.783
MDP0000147667 Malus domestica MDP0000147667 I 0.804
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.848
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.771
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.804
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.783
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.783
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.826
mgf000945m Mimulus guttatus mgf000945m I 0.729
mgf004425m Mimulus guttatus mgf004425m I 0.729
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.723
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.717
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.783
OBART11G21780 Oryza barthii OBART11G21780 N 0.783
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.783
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.804
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.761
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.804
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.783
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.761
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.783
OS11G0658700 Oryza sativa OS11G0658700 N 0.783
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.848
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.848
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.891
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.894
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.708
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.717
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.717
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.717
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.804
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.826
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.739
Pm024895 Prunus mume Pm024895 I 0.783
Pm006479 Prunus mume Pm006479 I 0.804
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.783
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.804
29813.m001508 Ricinus communis 29813.m001508 I 0.826
30138.m004061 Ricinus communis 30138.m004061 I 0.792
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.804
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.826
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.739
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.739
Si028357m.g Setaria italica Si028357m.g N 0.804
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.717
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.848
TCM_011687 Theobroma cacao TCM_011687 I 0.826
TCM_014051 Theobroma cacao TCM_014051 I 0.826
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.848
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.848
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.848
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.848
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.792
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.804