CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
AGL27
(
Arabidopsis thaliana
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AT1G77080
T252862_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.851
0.851
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.851
0.851
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.851
0.851
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G77080.11
MADS box
10
56
RIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYD
AT1G77080.12
MADS box
10
56
RIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYD
AT1G77080.2
MADS box
10
56
RIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYD
AT1G77080.4
MADS box
10
56
RIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYD
AT1G77080.5
MADS box
10
56
RIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYD
AT1G77080.8
MADS box
10
56
RIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYD
Links
Other
MADS box
family TFs
Other
Arabidopsis thaliana
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy