Bo2g020730 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo2g020730 T253065_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR

YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
0.958 0.958
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.729 0.729
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.729 0.729
Q9LEI3_HORVU
M10985_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM3_01
0.708 0.708
MLOC_61901
M10964_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.708 0.708
MADS15
M10972_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_01
0.708 0.708
MADS18
M10973_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS18_01
0.708 0.708
Q9FR84_MAIZE
M10981_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.708 0.708
O82695_MALDO
M11019_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_01
0.708 0.708
Q41829_MAIZE
M10977_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g020730.1 MADS box 10 57

Links

Other MADS box family TFs
Other Brassica oleracea TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.729
MADS15 Oryza sativa OS07G0108900 D 0.708
MADS18 Oryza sativa OS07G0605200 D 0.708
O82695_MALDO Malus domestica O82695_MALDO D 0.708
MLOC_61901 Hordeum vulgare MLOC_61901 D 0.708
Q9LEI3_HORVU Hordeum vulgare Q9LEI3_HORVU D 0.708
Q9FR84_MAIZE Zea mays Q9FR84_MAIZE D 0.708
Q41829_MAIZE Zea mays Q41829_MAIZE D 0.708
PI Arabidopsis thaliana AT5G20240 D 0.958
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.729
Cucsa.113430 Cucumis sativus Cucsa.113430 I 0.708
mgf007109m Mimulus guttatus mgf007109m I 0.708
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.729
cassava9991.m1 Manihot esculenta cassava9991.m1 I 0.708
Bostr.0556s0620 Boechera stricta Bostr.0556s0620 I 0.708
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.729
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.792
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.771
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.708
Carubv10027017m.g Capsella rubella Carubv10027017m.g I 0.729
Carubv10018408m.g Capsella rubella Carubv10018408m.g I 0.708
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.979
Cagra.2834s0001 Capsella grandiflora Cagra.2834s0001 I 0.708
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.979
Bostr.26833s0146 Boechera stricta Bostr.26833s0146 I 0.729
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.979
cassava40221.m1 Manihot esculenta cassava40221.m1 I 0.708
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.771
Cla018825 Citrullus lanatus Cla018825 I 0.708
Ca_24649 Cicer arietinum Ca_24649 I 0.729
Ca_13222 Cicer arietinum Ca_13222 I 0.708
Ca_13111 Cicer arietinum Ca_13111 I 0.750
Ca_12381 Cicer arietinum Ca_12381 I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.729
AGL8 Vitis vinifera VIT_17s0000g04990 I 0.708
VIT_01s0011g00100 Vitis vinifera VIT_01s0011g00100 I 0.708
Cla023547 Citrullus lanatus Cla023547 I 0.729
Pm004718 Prunus mume Pm004718 I 0.750
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.729
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.708
cassava28648.m1 Manihot esculenta cassava28648.m1 I 0.708
cassava29331.valid.m1 Manihot esculenta cassava29331.valid.m1 I 0.708
cassava10810.m1 Manihot esculenta cassava10810.m1 I 0.708
30138.m003939 Ricinus communis 30138.m003939 I 0.708
29648.m001978 Ricinus communis 29648.m001978 I 0.750
Pm025026 Prunus mume Pm025026 I 0.708
TRIUR3_21876 Triticum urartu TRIUR3_21876 I 0.708
LjT46F13.10.nd Lotus japonicus LjT46F13.10.nd I 0.708
SapurV1A.0072s0360 Salix purpurea SapurV1A.0072s0360 I 0.708
Pavir.Bb03293 Panicum virgatum Pavir.Bb03293 I 0.708
Pavir.Bb00065 Panicum virgatum Pavir.Bb00065 I 0.708
Pavir.Ba03990 Panicum virgatum Pavir.Ba03990 I 0.708
Pavir.Ba00457 Panicum virgatum Pavir.Ba00457 I 0.708
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.771
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.792
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.708
SapurV1A.0176s0500 Salix purpurea SapurV1A.0176s0500 I 0.708
SapurV1A.0323s0180 Salix purpurea SapurV1A.0323s0180 I 0.708
SapurV1A.0884s0020 Salix purpurea SapurV1A.0884s0020 I 0.708
LjT13A22.110.nc Lotus japonicus LjT13A22.110.nc I 0.708
LjT09J10.60.nc Lotus japonicus LjT09J10.60.nc I 0.708
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.729
PK29837.1 Cannabis sativa PK29837.1 I 0.708
PK14825.1 Cannabis sativa PK14825.1 I 0.708
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.979
Thhalv10004769m.g Eutrema salsugineum Thhalv10004769m.g I 0.729
Thhalv10001597m.g Eutrema salsugineum Thhalv10001597m.g I 0.708
orange1.1g035470m.g Citrus sinensis orange1.1g035470m.g I 0.708
MDP0000013331 Malus domestica MDP0000013331 I 0.708
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.771
Gorai.001G075800 Gossypium raimondii Gorai.001G075800 I 0.708
gene26119-v1.0-hybrid Fragaria vesca gene26119-v1.0-hybrid I 0.708
gene13356-v1.0-hybrid Fragaria vesca gene13356-v1.0-hybrid I 0.708
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.771
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.708
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.750
evm.TU.supercontig_1.162 Carica papaya evm.TU.supercontig_1.162 I 0.708
Eucgr.K02547 Eucalyptus grandis Eucgr.K02547 I 0.708
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.729
Gorai.003G103000 Gossypium raimondii Gorai.003G103000 I 0.708
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.771
Lus10034662.g Linum usitatissimum Lus10034662.g I 0.729
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.771
Lus10026679.g Linum usitatissimum Lus10026679.g I 0.708
Lus10021140.g Linum usitatissimum Lus10021140.g I 0.708
Lus10017871.g Linum usitatissimum Lus10017871.g I 0.729
Lus10007983.g Linum usitatissimum Lus10007983.g I 0.708
Lus10004637.g Linum usitatissimum Lus10004637.g I 0.708
Gorai.012G185500 Gossypium raimondii Gorai.012G185500 I 0.708
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.708
TRIUR3_20925 Triticum urartu TRIUR3_20925 I 0.708
OB07G10630 Oryza brachyantha OB07G10630 I 0.708
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.729
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.729
GLYMA08G36380 Glycine max GLYMA08G36380 I 0.708
GLYMA06G22650 Glycine max GLYMA06G22650 I 0.708
GLYMA05G07380 Glycine max GLYMA05G07380 I 0.729
GLYMA01G08150 Glycine max GLYMA01G08150 I 0.708
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.958
F775_52406 Aegilops tauschii F775_52406 I 0.708
GLYMA16G13070 Glycine max GLYMA16G13070 I 0.708
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.729
MTR_8g066260 Medicago truncatula MTR_8g066260 I 0.708
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.729
GSMUA_Achr8G04330_001 Musa acuminata GSMUA_Achr8G04330_001 I 0.708
GSMUA_Achr2G13650_001 Musa acuminata GSMUA_Achr2G13650_001 I 0.708
GSMUA_Achr10G06580_001 Musa acuminata GSMUA_Achr10G06580_001 I 0.708
GRMZM2G148693 Zea mays GRMZM2G148693 I 0.708
GRMZM2G147716 Zea mays GRMZM2G147716 I 0.729
GRMZM2G072582 Zea mays GRMZM2G072582 I 0.708
BRADI1G21980 Brachypodium distachyon BRADI1G21980 I 0.729
Bra036201 Brassica rapa Bra036201 I 0.708
Bra035952 Brassica rapa Bra035952 I 0.708
Bo3g010390 Brassica oleracea Bo3g010390 I 0.979
Bo2g161210 Brassica oleracea Bo2g161210 I 0.708
Bo2g149440 Brassica oleracea Bo2g149440 I 0.708
BGIOSGA026097 Oryza indica BGIOSGA026097 I 0.708
BGIOSGA024961 Oryza indica BGIOSGA024961 I 0.708
AGL8 Arabidopsis thaliana AT5G60910 I 0.729
AGL79 Arabidopsis thaliana AT3G30260 I 0.708
AMTR_s00047p00181740 Amborella trichopoda AMTR_s00047p00181740 I 0.708
Bo3g014100 Brassica oleracea Bo3g014100 I 1.000
Bo4g024840 Brassica oleracea Bo4g024840 I 0.708
Bra029347 Brassica rapa Bra029347 I 0.729
Bra020742 Brassica rapa Bra020742 I 0.708
Bra020093 Brassica rapa Bra020093 I 1.000
Bra006549 Brassica rapa Bra006549 I 1.000
Bra004927 Brassica rapa Bra004927 I 0.708
Bra002285 Brassica rapa Bra002285 I 0.979
Bo9g152080 Brassica oleracea Bo9g152080 I 0.979
Bo9g009030 Brassica oleracea Bo9g009030 I 0.708
AGL79 Arabidopsis lyrata Al_scaffold_0005_914 I 0.708
OB07G27140 Oryza brachyantha OB07G27140 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
Si030896m.g Setaria italica Si030896m.g I 0.729
Si030802m.g Setaria italica Si030802m.g I 0.708
Si010898m.g Setaria italica Si010898m.g I 0.708
AGL8 Arabidopsis lyrata scaffold_802730.1 I 0.729
Sb06g026300 Sorghum bicolor Sb06g026300 I 0.708
Sb02g038780 Sorghum bicolor Sb02g038780 I 0.729
Sb02g001090 Sorghum bicolor Sb02g001090 I 0.708
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.750
Solyc02g065730.1 Solanum lycopersicum Solyc02g065730.1 I 0.708
Solyc05g056620.1 Solanum lycopersicum Solyc05g056620.1 I 0.708
Traes_2DL_903A29CBA Triticum aestivum Traes_2DL_903A29CBA I 0.708
Traes_2BS_4818EA1FF Triticum aestivum Traes_2BS_4818EA1FF I 0.708
Traes_2BL_26F24E716 Triticum aestivum Traes_2BL_26F24E716 I 0.708
Traes_2AL_20C2D79E1 Triticum aestivum Traes_2AL_20C2D79E1 I 0.708
TCM_035212 Theobroma cacao TCM_035212 I 0.750
TCM_014345 Theobroma cacao TCM_014345 I 0.708
TCM_011475 Theobroma cacao TCM_011475 I 0.708
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.771
PRUPE_ppa010308mg Prunus persica PRUPE_ppa010308mg I 0.708
POPTR_0012s05950 Populus trichocarpa POPTR_0012s05950 I 0.708
POPTR_0010s16390 Populus trichocarpa POPTR_0010s16390 I 0.708
ONIVA07G20220 Oryza nivara ONIVA07G20220 I 0.708
ONIVA01G47560 Oryza nivara ONIVA01G47560 I 0.708
OMERI07G17960 Oryza meridionalis OMERI07G17960 I 0.708
OMERI07G00180 Oryza meridionalis OMERI07G00180 I 0.708
OLONG_015048 Oryza longistaminata OLONG_015048 I 0.708
OGLUM07G21410 Oryza glumaepatula OGLUM07G21410 I 0.708
OGLUM07G00660 Oryza glumaepatula OGLUM07G00660 I 0.708
OBART07G21550 Oryza barthii OBART07G21550 I 0.708
OPUNC07G00470 Oryza punctata OPUNC07G00470 I 0.708
OPUNC07G20110 Oryza punctata OPUNC07G20110 I 0.708
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.708
POPTR_0004s11430 Populus trichocarpa POPTR_0004s11430 I 0.708
PGSC0003DMG400028358 Solanum tuberosum PGSC0003DMG400028358 I 0.708
PGSC0003DMG400026563 Solanum tuberosum PGSC0003DMG400026563 I 0.708
ORUFI07G22480 Oryza rufipogon ORUFI07G22480 I 0.708
ORUFI07G00610 Oryza rufipogon ORUFI07G00610 I 0.708
ORGLA07G0222800 Oryza glaberrima ORGLA07G0222800 I 0.708
ORGLA07G0005200 Oryza glaberrima ORGLA07G0005200 I 0.708
OBART07G00700 Oryza barthii OBART07G00700 I 0.708