Bra022341 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra022341 T253312_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL103
M10918_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G18650_01 		0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022341.1-P MADS box 24 69

Links

Other MADS box family TFs
Other Brassica rapa TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g117290 Brassica oleracea Bo5g117290 I 1.000
Bo1g117390 Brassica oleracea Bo1g117390 I 0.870
Bra037571 Brassica rapa Bra037571 N 0.826
Cagra.1681s0033 Capsella grandiflora Cagra.1681s0033 I 0.804
Carubv10015986m.g Capsella rubella Carubv10015986m.g I 0.804
Thhalv10022126m.g Eutrema salsugineum Thhalv10022126m.g I 0.804
AGL105 Arabidopsis thaliana AT5G37415 I 0.769
AGL103 Arabidopsis thaliana AT3G18650 D 0.761
Bo3g071680 Brassica oleracea Bo3g071680 I 0.739
Bostr.25375s0045 Boechera stricta Bostr.25375s0045 I 0.717
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.717
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.702