CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBN13204
(
Caenorhabditis brenneri
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
CBN13204
T253476_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MEF2C
M02745_2.00
Homo sapiens
TWCTAWAAATAG
CTATTTWTAGWA
SELEX
Jolma et al.(2010)
MEF2C_dimer
0.958
0.958
MEF2C
M05551_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_HT-SELEX
0.958
0.958
MEF2C
M08149_2.00
Homo sapiens
NDDMYAAAAATAGMH
DKCTATTTTTRKHHN
ChIP-seq
Mathelier et al.(2014)
MA0497.1
0.958
0.958
MEF2C
M07980_2.00
Homo sapiens
NDDYYAAAAATAGHH
DDCTATTTTTRRHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2C_HudsonAlpha
0.958
0.958
MEF2C
M09248_2.00
Homo sapiens
DYYAAAAATARMH
DKYTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2C_HUMAN.H11MO.0.A
0.958
0.958
Mef2c
M09253_2.00
Mus musculus
DDMYAAAAATAGMHN
NDKCTATTTTTRKHH
Misc
Kulakovskiy et al.(2013)
MEF2C_MOUSE.H11MO.0.A
0.958
0.958
MEF2C
M09597_2.00
Homo sapiens
DHYWDAAATARM
KYTATTTHWRDH
Misc
Heinz et al.(2010)
GM12878-Mef2c_GSE32465
0.958
0.958
MEF2C
M10945_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_02
0.958
0.958
MEF2C
M10946_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_Q4
0.958
0.958
MEF2C
M05552_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_Methyl-HT-SELEX
0.958
0.958
MEF2A
M03340_2.00
Homo sapiens
KCTAWAAATAGM
KCTATTTWTAGM
SELEX
Jolma et al.(2013)
MEF2A_1
0.938
0.938
MEF2A
M07979_2.00
Homo sapiens
NDDHYAAAAATARHH
DDYTATTTTTRDHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2A_HudsonAlpha
0.938
0.938
MEF2A
M08212_2.00
Homo sapiens
CTAWWWWTAG
CTAWWWWTAG
ChIP-seq
Contrino et al.(2012)
Mv88
0.938
0.938
MEF2A
M08213_2.00
Homo sapiens
AAAATAGM
KCTATTTT
ChIP-seq
Contrino et al.(2012)
Mv90
0.938
0.938
MEF2A
M09247_2.00
Homo sapiens
DYYAAAAATAGMH
DKCTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2A_HUMAN.H11MO.0.A
0.938
0.938
Mef2a
M09255_2.00
Mus musculus
DDCYAWAAATARMH
DKYTATTTWTRGHH
Misc
Kulakovskiy et al.(2013)
MEF2A_MOUSE.H11MO.0.A
0.938
0.938
Mef2a
M09599_2.00
Mus musculus
CYNDAAATAG
CTATTTHNRG
Misc
Heinz et al.(2010)
HL1-Mef2a.biotin_GSE21529
0.938
0.938
MEF2A
M10933_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AMEF2_Q6
0.938
0.938
MEF2A
M10934_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMEF2_Q6
0.938
0.938
MEF2A
M10935_2.00
Homo sapiens
BTCTAAAAATAACYCY
RGRGTTATTTTTAGAV
Transfac
Matys et al.(2006)
V$MEF2_01
0.938
0.938
MEF2A
M10936_2.00
Homo sapiens
BNNNDDDCTAWAAATAGMHNNN
NNNDKCTATTTWTAGHHHNNNV
Transfac
Matys et al.(2006)
V$MEF2_02
0.938
0.938
MEF2A
M10937_2.00
Homo sapiens
NNNNDWKCTAWAAATAGMHHNN
NNDDKCTATTTWTAGMWHNNNN
Transfac
Matys et al.(2006)
V$MEF2_03
0.938
0.938
MEF2A
M10938_2.00
Homo sapiens
NVTGTTRCTAWAAATAGAAHHN
NDDWTCTATTTWTAGYAACABN
Transfac
Matys et al.(2006)
V$MEF2_04
0.938
0.938
MEF2A
M10939_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_05
0.938
0.938
MEF2A
M10940_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_Q6
0.938
0.938
MEF2A
M10941_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2_Q6_02
0.938
0.938
MEF2A
M10942_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MMEF2_Q6
0.938
0.938
MEF2A
M10943_2.00
Homo sapiens
NDKCTAWAAATAGMHH
DDKCTATTTWTAGMHN
Transfac
Matys et al.(2006)
V$RSRFC4_01
0.938
0.938
MEF2A
M10944_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RSRFC4_Q2
0.938
0.938
MEF2D
M03343_2.00
Homo sapiens
DCTAWAAATAGM
KCTATTTWTAGH
SELEX
Jolma et al.(2013)
MEF2D_1
0.917
0.917
MEF2D
M05555_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_HT-SELEX
0.917
0.917
MEF2D
M09250_2.00
Homo sapiens
CTAWAAATAGMH
DKCTATTTWTAG
Misc
Kulakovskiy et al.(2013)
MEF2D_HUMAN.H11MO.0.A
0.917
0.917
Mef2d
M09252_2.00
Mus musculus
DDCTAWAAATAGMH
DKCTATTTWTAGHH
Misc
Kulakovskiy et al.(2013)
MEF2D_MOUSE.H11MO.0.A
0.917
0.917
MEF2D
M10957_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2D_Q4
0.917
0.917
MEF2D
M05556_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_Methyl-HT-SELEX
0.917
0.917
MEF2B
M03344_2.00
Homo sapiens
RCTAWAAATAGM
KCTATTTWTAGY
SELEX
Jolma et al.(2013)
MEF2B_1
0.896
0.896
MEF2B
M05557_2.00
Homo sapiens
CYNDWWWHGG
CCDWWWHNRG
SELEX
Yin et al.(2017)
MEF2B_eDBD_HT-SELEX
0.896
0.896
MEF2B
M05559_2.00
Homo sapiens
CCVDWTATGGTAACA
TGTTACCATAWHBGG
SELEX
Yin et al.(2017)
MEF2B_FL_HT-SELEX
0.896
0.896
MEF2B
M09251_2.00
Homo sapiens
CYWAAAATAGHHHH
DDDDCTATTTTWRG
Misc
Kulakovskiy et al.(2013)
MEF2B_HUMAN.H11MO.0.A
0.896
0.896
MEF2B
M05558_2.00
Homo sapiens
CYWWWWWNGG
CCNWWWWWRG
SELEX
Yin et al.(2017)
MEF2B_eDBD_Methyl-HT-SELEX
0.896
0.896
MEF2B
M05560_2.00
Homo sapiens
CCVDATATGGTAACR
YGTTACCATATHBGG
SELEX
Yin et al.(2017)
MEF2B_FL_Methyl-HT-SELEX
0.896
0.896
Mef2
M08214_2.00
Drosophila melanogaster
YTAWWWWTAR
YTAWWWWTAR
ChIP-seq
Contrino et al.(2012)
Mf26
0.854
0.854
Mef2b
M10958_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2B_02
0.854
0.854
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN13204
MADS box
10
57
RIQDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIVFNSTNKLFQY
Links
Other
MADS box
family TFs
Other
Caenorhabditis brenneri
TFs
493 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Otx2
Mus musculus
ENSMUSG00000021848
D
0.000
TPRX1
Homo sapiens
ENSG00000178928
I
0.000
pitx1
Gasterosteus aculeatus
ENSGACG00000016483
I
0.000
OTX2
Myotis lucifugus
ENSMLUG00000022591
I
0.000
Ocbimv22035611m.g
Octopus bimaculoides
Ocbimv22035611m.g
I
0.000
Hsal_07660--XP_394161.1_APIME
Harpegnathos saltator
Hsal_07660--XP_394161.1_APIME
I
0.000
Cmyd_10017639
Chelonia mydas
Cmyd_10017639
I
0.000
unc-30
Caenorhabditis elegans
WBGene00006766
I
0.000
HMEL015659
Heliconius melpomene
HMEL015659
I
0.000
ENSCSAG00000014537
Chlorocebus sabaeus
ENSCSAG00000014537
I
0.000
OTX2
Choloepus hoffmanni
ENSCHOG00000013827
I
0.000
ANCCEY_11895
Ancylostoma ceylanicum
ANCCEY_11895
N
0.000
LDEC016519
Leptinotarsa decemlineata
LDEC016519
N
0.000
CLEC006124
Cimex lectularius
CLEC006124
N
0.000
SMTD_0001972301
Schistosoma mattheei
SMTD_0001972301
N
0.000
snap_masked-nMf.1.1.scaf16485-processed-gene-0.2
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf16485-processed-gene-0.2
N
0.000
snap_masked-nMf.1.1.scaf19847-processed-gene-0.1
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf19847-processed-gene-0.1
N
0.000
Alligator_sinensis_CCG004399.1
Alligator sinensis
Alligator_sinensis_CCG004399.1
N
0.000
YQE_12574
Dendroctonus ponderosae
YQE_12574
N
0.000
TELCIR_18721
Teladorsagia circumcincta
TELCIR_18721
N
0.000
TTRE_0000079401
Trichuris trichiura
TTRE_0000079401
N
0.000
LDEC023625
Leptinotarsa decemlineata
LDEC023625
N
0.000
Sjc_0128760
Schistosoma japonicum
Sjc_0128760
N
0.000
ANCCEY_04348
Ancylostoma ceylanicum
ANCCEY_04348
N
0.000
ANCCAN_27245
Ancylostoma caninum
ANCCAN_27245
N
0.000
ASIS015315
Anopheles sinensis
ASIS015315
N
0.000
AEPI010431
Anopheles epiroticus
AEPI010431
N
0.000
GPLIN_000181000
Globodera pallida
GPLIN_000181000
N
0.000
AALB006874
Anopheles albimanus
AALB006874
N
0.000
Hba_17538
Heterorhabditis bacteriophora
Hba_17538
N
0.000
XP_002164986.1
Hydra magnipapillata
XP_002164986.1
N
0.000
OESDEN_16215
Oesophagostomum dentatum
OESDEN_16215
N
0.000
Traes_3AS_348CA06D5
Triticum aestivum
Traes_3AS_348CA06D5
N
0.000
NEMVEDRAFT_v1g48861
Nematostella vectensis
NEMVEDRAFT_v1g48861
N
0.000
ISCW006446
Ixodes scapularis
ISCW006446
N
0.000
WUBG_02192
Wuchereria bancrofti
WUBG_02192
N
0.000
LEUTX
Felis catus
ENSFCAG00000023272
N
0.000
ENSCSAG00000003788
Chlorocebus sabaeus
ENSCSAG00000003788
N
0.000
ENSCJAG00000011381
Callithrix jacchus
ENSCJAG00000011381
N
0.000
DPRX
Choloepus hoffmanni
ENSCHOG00000010851
N
0.000
LEUTX
Canis familiaris
ENSCAFG00000028552
N
0.000
LEUTX
Bos taurus
ENSBTAG00000046425
N
0.000
EFV55958
Trichinella spiralis
EFV55958
N
0.000
CGI_10007832
Crassostrea gigas
CGI_10007832
N
0.000
CBG15039
Caenorhabditis briggsae
CBG15039
N
0.000
ACEP26305
Atta cephalotes
ACEP26305
N
0.000
LEUTX
Homo sapiens
ENSG00000213921
N
0.000
ENSLAFG00000000420
Loxodonta africana
ENSLAFG00000000420
N
0.000
GB50469
Apis mellifera
GB50469
N
0.000
GK22279
Drosophila willistoni
FBgn0224264
N
0.000
ENSTTRG00000007283
Tursiops truncatus
ENSTTRG00000007283
N
0.000
ENSSTOG00000026735
Ictidomys tridecemlineatus
ENSSTOG00000026735
N
0.000
ENSSSCG00000002985
Sus scrofa
ENSSSCG00000002985
N
0.000
ENSPVAG00000005359
Pteropus vampyrus
ENSPVAG00000005359
N
0.000
LEUTX
Pan troglodytes
ENSPTRG00000033892
N
0.000
ENSPANG00000010570
Papio anubis
ENSPANG00000010570
N
0.000
ENSOGAG00000034150
Otolemur garnettii
ENSOGAG00000034150
N
0.000
ENSOARG00000006291
Ovis aries
ENSOARG00000006291
N
0.000
DMBX1
Monodelphis domestica
ENSMODG00000001963
N
0.000
WUBG_02624
Wuchereria bancrofti
WUBG_02624
N
0.000