CBN13204 (Caenorhabditis brenneri)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 CBN13204 T253476_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MEF2C
M02745_2.00
Homo sapiens
TWCTAWAAATAG

CTATTTWTAGWA
SELEX
Jolma et al.(2010)
MEF2C_dimer
0.958 0.958
MEF2C
M05551_2.00
Homo sapiens
CYWWATWWGG

CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_HT-SELEX
0.958 0.958
MEF2C
M08149_2.00
Homo sapiens
NDDMYAAAAATAGMH

DKCTATTTTTRKHHN
ChIP-seq
Mathelier et al.(2014)
MA0497.1
0.958 0.958
MEF2C
M07980_2.00
Homo sapiens
NDDYYAAAAATAGHH

DDCTATTTTTRRHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2C_HudsonAlpha
0.958 0.958
MEF2C
M09248_2.00
Homo sapiens
DYYAAAAATARMH

DKYTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2C_HUMAN.H11MO.0.A
0.958 0.958
Mef2c
M09253_2.00
Mus musculus
DDMYAAAAATAGMHN

NDKCTATTTTTRKHH
Misc
Kulakovskiy et al.(2013)
MEF2C_MOUSE.H11MO.0.A
0.958 0.958
MEF2C
M09597_2.00
Homo sapiens
DHYWDAAATARM

KYTATTTHWRDH
Misc
Heinz et al.(2010)
GM12878-Mef2c_GSE32465
0.958 0.958
MEF2C
M10945_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_02
0.958 0.958
MEF2C
M10946_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_Q4
0.958 0.958
MEF2C
M05552_2.00
Homo sapiens
CYWWATWWGG

CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_Methyl-HT-SELEX
0.958 0.958
MEF2A
M03340_2.00
Homo sapiens
KCTAWAAATAGM

KCTATTTWTAGM
SELEX
Jolma et al.(2013)
MEF2A_1
0.938 0.938
MEF2A
M07979_2.00
Homo sapiens
NDDHYAAAAATARHH

DDYTATTTTTRDHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2A_HudsonAlpha
0.938 0.938
MEF2A
M08212_2.00
Homo sapiens
CTAWWWWTAG

CTAWWWWTAG
ChIP-seq
Contrino et al.(2012)
Mv88
0.938 0.938
MEF2A
M08213_2.00
Homo sapiens
AAAATAGM

KCTATTTT
ChIP-seq
Contrino et al.(2012)
Mv90
0.938 0.938
MEF2A
M09247_2.00
Homo sapiens
DYYAAAAATAGMH

DKCTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2A_HUMAN.H11MO.0.A
0.938 0.938
Mef2a
M09255_2.00
Mus musculus
DDCYAWAAATARMH

DKYTATTTWTRGHH
Misc
Kulakovskiy et al.(2013)
MEF2A_MOUSE.H11MO.0.A
0.938 0.938
Mef2a
M09599_2.00
Mus musculus
CYNDAAATAG

CTATTTHNRG
Misc
Heinz et al.(2010)
HL1-Mef2a.biotin_GSE21529
0.938 0.938
MEF2A
M10933_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AMEF2_Q6
0.938 0.938
MEF2A
M10934_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMEF2_Q6
0.938 0.938
MEF2A
M10935_2.00
Homo sapiens
BTCTAAAAATAACYCY

RGRGTTATTTTTAGAV
Transfac
Matys et al.(2006)
V$MEF2_01
0.938 0.938
MEF2A
M10936_2.00
Homo sapiens
BNNNDDDCTAWAAATAGMHNNN

NNNDKCTATTTWTAGHHHNNNV
Transfac
Matys et al.(2006)
V$MEF2_02
0.938 0.938
MEF2A
M10937_2.00
Homo sapiens
NNNNDWKCTAWAAATAGMHHNN

NNDDKCTATTTWTAGMWHNNNN
Transfac
Matys et al.(2006)
V$MEF2_03
0.938 0.938
MEF2A
M10938_2.00
Homo sapiens
NVTGTTRCTAWAAATAGAAHHN

NDDWTCTATTTWTAGYAACABN
Transfac
Matys et al.(2006)
V$MEF2_04
0.938 0.938
MEF2A
M10939_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_05
0.938 0.938
MEF2A
M10940_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_Q6
0.938 0.938
MEF2A
M10941_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2_Q6_02
0.938 0.938
MEF2A
M10942_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MMEF2_Q6
0.938 0.938
MEF2A
M10943_2.00
Homo sapiens
NDKCTAWAAATAGMHH

DDKCTATTTWTAGMHN
Transfac
Matys et al.(2006)
V$RSRFC4_01
0.938 0.938
MEF2A
M10944_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RSRFC4_Q2
0.938 0.938
MEF2D
M03343_2.00
Homo sapiens
DCTAWAAATAGM

KCTATTTWTAGH
SELEX
Jolma et al.(2013)
MEF2D_1
0.917 0.917
MEF2D
M05555_2.00
Homo sapiens
CYWWATWWGG

CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_HT-SELEX
0.917 0.917
MEF2D
M09250_2.00
Homo sapiens
CTAWAAATAGMH

DKCTATTTWTAG
Misc
Kulakovskiy et al.(2013)
MEF2D_HUMAN.H11MO.0.A
0.917 0.917
Mef2d
M09252_2.00
Mus musculus
DDCTAWAAATAGMH

DKCTATTTWTAGHH
Misc
Kulakovskiy et al.(2013)
MEF2D_MOUSE.H11MO.0.A
0.917 0.917
MEF2D
M10957_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2D_Q4
0.917 0.917
MEF2D
M05556_2.00
Homo sapiens
CYWWATWWGG

CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_Methyl-HT-SELEX
0.917 0.917
MEF2B
M03344_2.00
Homo sapiens
RCTAWAAATAGM

KCTATTTWTAGY
SELEX
Jolma et al.(2013)
MEF2B_1
0.896 0.896
MEF2B
M05557_2.00
Homo sapiens
CYNDWWWHGG

CCDWWWHNRG
SELEX
Yin et al.(2017)
MEF2B_eDBD_HT-SELEX
0.896 0.896
MEF2B
M05559_2.00
Homo sapiens
CCVDWTATGGTAACA

TGTTACCATAWHBGG
SELEX
Yin et al.(2017)
MEF2B_FL_HT-SELEX
0.896 0.896
MEF2B
M09251_2.00
Homo sapiens
CYWAAAATAGHHHH

DDDDCTATTTTWRG
Misc
Kulakovskiy et al.(2013)
MEF2B_HUMAN.H11MO.0.A
0.896 0.896
MEF2B
M05558_2.00
Homo sapiens
CYWWWWWNGG

CCNWWWWWRG
SELEX
Yin et al.(2017)
MEF2B_eDBD_Methyl-HT-SELEX
0.896 0.896
MEF2B
M05560_2.00
Homo sapiens
CCVDATATGGTAACR

YGTTACCATATHBGG
SELEX
Yin et al.(2017)
MEF2B_FL_Methyl-HT-SELEX
0.896 0.896
Mef2
M08214_2.00
Drosophila melanogaster
YTAWWWWTAR

YTAWWWWTAR
ChIP-seq
Contrino et al.(2012)
Mf26
0.854 0.854
Mef2b
M10958_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2B_02
0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN13204 MADS box 10 57

Links

Other MADS box family TFs
Other Caenorhabditis brenneri TFs

493 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Otx2 Mus musculus ENSMUSG00000021848 D 0.000
TPRX1 Homo sapiens ENSG00000178928 I 0.000
pitx1 Gasterosteus aculeatus ENSGACG00000016483 I 0.000
OTX2 Myotis lucifugus ENSMLUG00000022591 I 0.000
Ocbimv22035611m.g Octopus bimaculoides Ocbimv22035611m.g I 0.000
Hsal_07660--XP_394161.1_APIME Harpegnathos saltator Hsal_07660--XP_394161.1_APIME I 0.000
Cmyd_10017639 Chelonia mydas Cmyd_10017639 I 0.000
unc-30 Caenorhabditis elegans WBGene00006766 I 0.000
HMEL015659 Heliconius melpomene HMEL015659 I 0.000
ENSCSAG00000014537 Chlorocebus sabaeus ENSCSAG00000014537 I 0.000
OTX2 Choloepus hoffmanni ENSCHOG00000013827 I 0.000
ANCCEY_11895 Ancylostoma ceylanicum ANCCEY_11895 N 0.000
LDEC016519 Leptinotarsa decemlineata LDEC016519 N 0.000
CLEC006124 Cimex lectularius CLEC006124 N 0.000
SMTD_0001972301 Schistosoma mattheei SMTD_0001972301 N 0.000
snap_masked-nMf.1.1.scaf16485-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf16485-processed-gene-0.2 N 0.000
snap_masked-nMf.1.1.scaf19847-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf19847-processed-gene-0.1 N 0.000
Alligator_sinensis_CCG004399.1 Alligator sinensis Alligator_sinensis_CCG004399.1 N 0.000
YQE_12574 Dendroctonus ponderosae YQE_12574 N 0.000
TELCIR_18721 Teladorsagia circumcincta TELCIR_18721 N 0.000
TTRE_0000079401 Trichuris trichiura TTRE_0000079401 N 0.000
LDEC023625 Leptinotarsa decemlineata LDEC023625 N 0.000
Sjc_0128760 Schistosoma japonicum Sjc_0128760 N 0.000
ANCCEY_04348 Ancylostoma ceylanicum ANCCEY_04348 N 0.000
ANCCAN_27245 Ancylostoma caninum ANCCAN_27245 N 0.000
ASIS015315 Anopheles sinensis ASIS015315 N 0.000
AEPI010431 Anopheles epiroticus AEPI010431 N 0.000
GPLIN_000181000 Globodera pallida GPLIN_000181000 N 0.000
AALB006874 Anopheles albimanus AALB006874 N 0.000
Hba_17538 Heterorhabditis bacteriophora Hba_17538 N 0.000
XP_002164986.1 Hydra magnipapillata XP_002164986.1 N 0.000
OESDEN_16215 Oesophagostomum dentatum OESDEN_16215 N 0.000
Traes_3AS_348CA06D5 Triticum aestivum Traes_3AS_348CA06D5 N 0.000
NEMVEDRAFT_v1g48861 Nematostella vectensis NEMVEDRAFT_v1g48861 N 0.000
ISCW006446 Ixodes scapularis ISCW006446 N 0.000
WUBG_02192 Wuchereria bancrofti WUBG_02192 N 0.000
LEUTX Felis catus ENSFCAG00000023272 N 0.000
ENSCSAG00000003788 Chlorocebus sabaeus ENSCSAG00000003788 N 0.000
ENSCJAG00000011381 Callithrix jacchus ENSCJAG00000011381 N 0.000
DPRX Choloepus hoffmanni ENSCHOG00000010851 N 0.000
LEUTX Canis familiaris ENSCAFG00000028552 N 0.000
LEUTX Bos taurus ENSBTAG00000046425 N 0.000
EFV55958 Trichinella spiralis EFV55958 N 0.000
CGI_10007832 Crassostrea gigas CGI_10007832 N 0.000
CBG15039 Caenorhabditis briggsae CBG15039 N 0.000
ACEP26305 Atta cephalotes ACEP26305 N 0.000
LEUTX Homo sapiens ENSG00000213921 N 0.000
ENSLAFG00000000420 Loxodonta africana ENSLAFG00000000420 N 0.000
GB50469 Apis mellifera GB50469 N 0.000
GK22279 Drosophila willistoni FBgn0224264 N 0.000
ENSTTRG00000007283 Tursiops truncatus ENSTTRG00000007283 N 0.000
ENSSTOG00000026735 Ictidomys tridecemlineatus ENSSTOG00000026735 N 0.000
ENSSSCG00000002985 Sus scrofa ENSSSCG00000002985 N 0.000
ENSPVAG00000005359 Pteropus vampyrus ENSPVAG00000005359 N 0.000
LEUTX Pan troglodytes ENSPTRG00000033892 N 0.000
ENSPANG00000010570 Papio anubis ENSPANG00000010570 N 0.000
ENSOGAG00000034150 Otolemur garnettii ENSOGAG00000034150 N 0.000
ENSOARG00000006291 Ovis aries ENSOARG00000006291 N 0.000
DMBX1 Monodelphis domestica ENSMODG00000001963 N 0.000
WUBG_02624 Wuchereria bancrofti WUBG_02624 N 0.000