CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
AGL57
(
Arabidopsis lyrata
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
fgenesh1_pm.C_scaffold_3000303
T254007_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL57
M10917_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G04100_01
0.958
0.958
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_3000303
MADS box
21
68
KVENYGDRMITFSKRKAGIFKKMNELVAMCDVEVAFLIFSQAKKPYTF
Links
Other
MADS box
family TFs
Other
Arabidopsis lyrata
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL57
Arabidopsis thaliana
AT3G04100
D
0.958
Bostr.2570s0298
Boechera stricta
Bostr.2570s0298
I
0.917
Carubv10016398m.g
Capsella rubella
Carubv10016398m.g
I
0.812
Cagra.4031s0057
Capsella grandiflora
Cagra.4031s0057
I
0.812
Thhalv10022229m.g
Eutrema salsugineum
Thhalv10022229m.g
I
0.750