GSMUA_Achr5G26530_001 (Musa acuminata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GSMUA_Achr5G26530_001 T254392_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AP1
M08144_2.00
Arabidopsis thaliana
MYAAAAAWRGAAA

TTTCYWTTTTTRK
ChIP-seq
Mathelier et al.(2014)
MA0940.1
0.708 0.708
MADS50
M10968_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.708 0.708
AP1
M10905_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSA_Q2
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr5P26530_001 MADS box 20 67

Links

Other MADS box family TFs
Other Musa acuminata TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29693.m002042 Ricinus communis 29693.m002042 N 0.708
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.833
AGL61 Arabidopsis thaliana AT2G24840 N 0.729
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.729
AMTR_s00001p00266470 Amborella trichopoda AMTR_s00001p00266470 I 0.708
AP1 Arabidopsis thaliana AT1G69120 D 0.708
AP1 Arabidopsis lyrata fgenesh2_kg.2__1169__AT1G69120.1 I 0.708
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.729
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.729
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.812
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.792
BGIOSGA007600 Oryza indica BGIOSGA007600 N 0.750
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.708
BGIOSGA022830 Oryza indica BGIOSGA022830 N 0.729
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.792
Bo3g009340 Brassica oleracea Bo3g009340 I 0.708
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
Bo6g095760 Brassica oleracea Bo6g095760 I 0.708
Bo6g108600 Brassica oleracea Bo6g108600 I 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bo9g093920 Brassica oleracea Bo9g093920 I 0.708
Bostr.10273s0459 Boechera stricta Bostr.10273s0459 I 0.708
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
Bra004007 Brassica rapa Bra004007 I 0.708
Bra004361 Brassica rapa Bra004361 I 0.729
Bra006214 Brassica rapa Bra006214 I 0.708
Bra007829 Brassica rapa Bra007829 N 0.708
Bra026764 Brassica rapa Bra026764 N 0.729
Bra029424 Brassica rapa Bra029424 I 0.708
Bra032057 Brassica rapa Bra032057 N 0.729
Bra038326 Brassica rapa Bra038326 I 0.708
BRADI1G20090 Brachypodium distachyon BRADI1G20090 N 0.729
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.708
BRADI2G26320 Brachypodium distachyon BRADI2G26320 N 0.750
BRADI3G18670 Brachypodium distachyon BRADI3G18670 N 0.708
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
BRADI4G39420 Brachypodium distachyon BRADI4G39420 N 0.771
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.729
Cagra.1157s0032 Capsella grandiflora Cagra.1157s0032 I 0.708
Cagra.5588s0006 Capsella grandiflora Cagra.5588s0006 I 0.708
Carubv10002596m.g Capsella rubella Carubv10002596m.g I 0.708
Carubv10022005m.g Capsella rubella Carubv10022005m.g I 0.708
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.729
Ca_16423 Cicer arietinum Ca_16423 I 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
Eucgr.K02711 Eucalyptus grandis Eucgr.K02711 I 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.708
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.708
F775_00385 Aegilops tauschii F775_00385 I 0.729
F775_04223 Aegilops tauschii F775_04223 I 0.854
F775_08627 Aegilops tauschii F775_08627 I 0.708
F775_23542 Aegilops tauschii F775_23542 N 0.729
F775_23758 Aegilops tauschii F775_23758 I 0.729
F775_26069 Aegilops tauschii F775_26069 I 0.708
F775_29801 Aegilops tauschii F775_29801 I 0.708
F775_43210 Aegilops tauschii F775_43210 I 0.854
GLYMA09G40251 Glycine max GLYMA09G40251 I 0.708
GLYMA18G45761 Glycine max GLYMA18G45761 I 0.729
Gorai.005G221300 Gossypium raimondii Gorai.005G221300 I 0.708
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.708
Gorai.008G115200 Gossypium raimondii Gorai.008G115200 I 0.708
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.729
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.708
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.708
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.729
GRMZM2G459864 Zea mays GRMZM2G459864 N 0.750
GRMZM2G472100 Zea mays GRMZM2G472100 N 0.729
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.833
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.917
GSMUA_Achr8G09250_001 Musa acuminata GSMUA_Achr8G09250_001 I 0.750
gw1.81.151.1 Physcomitrella patens gw1.81.151.1 N 0.708
gw1.88.220.1 Physcomitrella patens gw1.88.220.1 N 0.708
LPERR01G40130 Leersia perrieri LPERR01G40130 N 0.771
LPERR02G10390 Leersia perrieri LPERR02G10390 N 0.750
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.708
LPERR08G18330 Leersia perrieri LPERR08G18330 I 0.729
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.708
MADS50 Oryza sativa OS03G0122600 D 0.708
MDP0000221590 Malus domestica MDP0000221590 N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.708
mgf006616m Mimulus guttatus mgf006616m I 0.708
MLOC_76418 Hordeum vulgare MLOC_76418 I 0.708
MTR_4g102530 Medicago truncatula MTR_4g102530 I 0.708
OB01G55160 Oryza brachyantha OB01G55160 N 0.771
OB03G11760 Oryza brachyantha OB03G11760 I 0.708
OB06G21580 Oryza brachyantha OB06G21580 N 0.729
OB08G28340 Oryza brachyantha OB08G28340 I 0.708
OBART01G45740 Oryza barthii OBART01G45740 N 0.792
OBART03G01800 Oryza barthii OBART03G01800 I 0.708
OBART03G06320 Oryza barthii OBART03G06320 I 0.708
OBART06G13310 Oryza barthii OBART06G13310 N 0.729
OBART09G00850 Oryza barthii OBART09G00850 N 0.792
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.792
OGLUM02G04740 Oryza glumaepatula OGLUM02G04740 N 0.750
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.708
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.708
OGLUM06G14250 Oryza glumaepatula OGLUM06G14250 N 0.708
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.792
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.708
OLONG_015132 Oryza longistaminata OLONG_015132 N 0.729
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.792
OLONG_027660 Oryza longistaminata OLONG_027660 N 0.792
OMERI02G05750 Oryza meridionalis OMERI02G05750 N 0.729
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.708
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.708
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.792
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.792
ONIVA02G05120 Oryza nivara ONIVA02G05120 N 0.750
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.708
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.708
ONIVA06G15960 Oryza nivara ONIVA06G15960 N 0.729
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.792
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.792
OPUNC02G04080 Oryza punctata OPUNC02G04080 N 0.729
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.708
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.708
OPUNC06G12720 Oryza punctata OPUNC06G12720 N 0.729
OPUNC08G18260 Oryza punctata OPUNC08G18260 I 0.708
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.729
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.812
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.792
ORGLA02G0045500 Oryza glaberrima ORGLA02G0045500 N 0.750
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.708
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.708
ORGLA06G0273400 Oryza glaberrima ORGLA06G0273400 N 0.729
ORGLA09G0007400 Oryza glaberrima ORGLA09G0007400 N 0.792
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.792
ORUFI02G05030 Oryza rufipogon ORUFI02G05030 N 0.750
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.708
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.708
ORUFI06G14240 Oryza rufipogon ORUFI06G14240 N 0.729
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.792
OS01G0975800 Oryza sativa OS01G0975800 N 0.792
OS03G0186600 Oryza sativa OS03G0186600 I 0.708
OS09G0116800 Oryza sativa OS09G0116800 N 0.792
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 0.792
Pavir.Bb00803 Panicum virgatum Pavir.Bb00803 N 0.729
Pavir.Bb00804 Panicum virgatum Pavir.Bb00804 N 0.792
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.708
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.708
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.833
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.833
PDK_20s1363011g003 Phoenix dactylifera PDK_20s1363011g003 N 0.708
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.708
Pm022002 Prunus mume Pm022002 I 0.729
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.708
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.708
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.708
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.708
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.708
Sb01g049020 Sorghum bicolor Sb01g049020 I 0.750
Sb02g006700 Sorghum bicolor Sb02g006700 N 0.729
Sb02g006710 Sorghum bicolor Sb02g006710 N 0.708
Sb06g015640 Sorghum bicolor Sb06g015640 N 0.729
Sb07g007306 Sorghum bicolor Sb07g007306 N 0.750
Sb07g007373 Sorghum bicolor Sb07g007373 N 0.750
Sb07g026180 Sorghum bicolor Sb07g026180 I 0.708
Sb0836s002010 Sorghum bicolor Sb0836s002010 N 0.708
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.833
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
SELMODRAFT_450772 Selaginella moellendorffii SELMODRAFT_450772 N 0.708
SELMODRAFT_450775 Selaginella moellendorffii SELMODRAFT_450775 N 0.708
SELMODRAFT_450776 Selaginella moellendorffii SELMODRAFT_450776 N 0.708
SELMODRAFT_450777 Selaginella moellendorffii SELMODRAFT_450777 N 0.708
Si014540m.g Setaria italica Si014540m.g I 0.708
Si019951m.g Setaria italica Si019951m.g I 0.833
Si032189m.g Setaria italica Si032189m.g N 0.708
Si037358m.g Setaria italica Si037358m.g I 0.708
Si038257m.g Setaria italica Si038257m.g I 0.729
Si038960m.g Setaria italica Si038960m.g N 0.750
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.708
TCM_007378 Theobroma cacao TCM_007378 I 0.708
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
Thhalv10019025m.g Eutrema salsugineum Thhalv10019025m.g I 0.708
TRAES3BF009000010CFD_g Triticum aestivum TRAES3BF009000010CFD_g I 0.708
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.854
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.708
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.708
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.708
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.708
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.708
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.854
Traes_7AS_F568FCBF1 Triticum aestivum Traes_7AS_F568FCBF1 I 0.717
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.707
Traes_7DS_4DF7EB08F Triticum aestivum Traes_7DS_4DF7EB08F I 0.729
TRIUR3_28473 Triticum urartu TRIUR3_28473 I 0.708
TRIUR3_30872 Triticum urartu TRIUR3_30872 I 0.708
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.708
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.708
VIT_02s0025g04650 Vitis vinifera VIT_02s0025g04650 I 0.708
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.708
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I 0.708
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.708