YQE_03076 (Dendroctonus ponderosae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 YQE_03076 T256843_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.840 0.840
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.840 0.840
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.840 0.840
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.800 0.800
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.800 0.800
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.800 0.800
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.800 0.800
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.800 0.800
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.800 0.800
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.800 0.800
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.800 0.800
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.800 0.800
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.800 0.800
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.800 0.800
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.800 0.800
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.800 0.800
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.800 0.800
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.800 0.800
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.800 0.800
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.800 0.800
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.800 0.800
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.800 0.800
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.800 0.800
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.800 0.800
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN80504 MADS box 118 142

Links

Other MADS box family TFs
Other Dendroctonus ponderosae TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.880
AAEL010925 Aedes aegypti AAEL010925 I 0.760
ANCDUO_18278 Ancylostoma duodenale ANCDUO_18278 I 0.913
ANCDUO_13359 Ancylostoma duodenale ANCDUO_13359 I 0.840
AALB009947 Anopheles albimanus AALB009947 I 0.840
AARA006326 Anopheles arabiensis AARA006326 I 0.913
AATE005744 Anopheles atroparvus AATE005744 I 0.840
ACHR006794 Anopheles christyi ACHR006794 I 0.840
ACOM041695 Anopheles coluzzii ACOM041695 I 0.913
ACUA001543 Anopheles culicifacies ACUA001543 I 0.840
AEPI007009 Anopheles epiroticus AEPI007009 I 0.955
AFAF006302 Anopheles farauti AFAF006302 I 0.913
AFUN006149 Anopheles funestus AFUN006149 I 0.955
AGAP010511 Anopheles gambiae AGAP010511 I 0.913
AMAM005702 Anopheles maculatus AMAM005702 I 0.840
AMEC009624 Anopheles melas AMEC009624 I 0.913
AMIN001256 Anopheles minimus AMIN001256 I 0.840
AQUA001309 Anopheles quadriannulatus AQUA001309 I 0.913
ASTEI07121 Anopheles stephensi ASTEI07121 I 0.875
GB47234 Apis mellifera GB47234 I 0.840
ALUE_0001693901 Ascaris lumbricoides ALUE_0001693901 I 0.840
ACEP12187 Atta cephalotes ACEP12187 I 0.840
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.840
BGIBMGA001382 Bombyx mori BGIBMGA001382 I 0.875
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.800
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.800
CJA08385 Caenorhabditis japonica CJA08385 I 0.840
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.840
CapteG221100 Capitella teleta CapteG221100 I 0.840
SRF Choloepus hoffmanni ENSCHOG00000008671 I 0.800
CLEC013393 Cimex lectularius CLEC013393 I 0.840
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.760
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.840
CpipJ_CPIJ016459 Culex pipiens CpipJ_CPIJ016459 I 0.913
CpipJ_CPIJ008336 Culex pipiens CpipJ_CPIJ008336 I 0.880
CPIJ008336 Culex quinquefasciatus CPIJ008336 I 0.880
CPIJ016459 Culex quinquefasciatus CPIJ016459 I 0.913
KGM_22252 Danaus plexippus KGM_22252 I 0.875
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.800
GF11392 Drosophila ananassae FBgn0088432 I 0.840
GG22961 Drosophila erecta FBgn0115118 I 0.840
GH20989 Drosophila grimshawi FBgn0128451 I 0.840
bs Drosophila melanogaster FBgn0004101 D 0.840
GI21322 Drosophila mojavensis FBgn0144052 I 0.840
GL20046 Drosophila persimilis FBgn0157643 I 0.840
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.840
GM11854 Drosophila sechellia FBgn0166795 I 0.840
GD11852 Drosophila simulans FBgn0183591 I 0.840
GJ21595 Drosophila virilis FBgn0208714 I 0.840
GK22205 Drosophila willistoni FBgn0224190 I 0.840
GE14398 Drosophila yakuba FBgn0232006 I 0.840
HHAL001484-PA Halyomorpha halys HHAL001484-PA I 0.840
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.840
HMEL017831 Heliconius melpomene HMEL017831 I 0.875
HelroG137972 Helobdella robusta HelroG137972 I 0.720
ISCW019966 Ixodes scapularis ISCW019966 I 0.800
LDEC007646 Leptinotarsa decemlineata LDEC007646 I 0.917
LotgiG59850 Lottia gigantea LotgiG59850 I 0.840
LCUP011662 Lucilia cuprina LCUP011662 I 0.875
MESCA004860 Megaselia scalaris MESCA004860 I 0.840
MDOA002443 Musca domestica MDOA002443 I 0.840
NV18787 Nasonia vitripennis NV18787 I 0.840
OFLC_0001346401 Onchocerca flexuosa OFLC_0001346401 I 0.778
SRF Oryzias latipes ENSORLG00000013036 I 0.800
PPAI006358 Phlebotomus papatasi PPAI006358 I 0.733
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.840
RPRC001752 Rhodnius prolixus RPRC001752 I 0.778
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.800
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.800
SINV23963 Solenopsis invicta SINV23963 I 0.880
L596_g5274 Steinernema carpocapsae L596_g5274 I 0.800
L889_g24087 Steinernema feltiae L889_g24087 I 0.800
L893_g14743 Steinernema glaseri L893_g14743 I 0.800
L898_g9834 Steinernema monticolum L898_g9834 I 0.800
L892_g14520 Steinernema scapterisci L892_g14520 I 0.800
SMAR003014 Strigamia maritima SMAR003014 I 0.800
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.840
TC004911 Tribolium castaneum TC004911 I 0.880
D917_02561 Trichinella nativa D917_02561 I 0.800
EFV60876 Trichinella spiralis EFV60876 I 0.800
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.800
D918_07967 Trichuris suis D918_07967 I 0.800
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.800
ENSXMAG00000018559 Xiphophorus maculatus ENSXMAG00000018559 I 0.800
L798_08800 Zootermopsis nevadensis L798_08800 I 0.840