Eucgr.I02596 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.I02596 T257993_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.729 0.729
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.I02596.1 MADS box 10 57

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.792
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.792
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.771
29804.m001536 Ricinus communis 29804.m001536 I 0.771
Eucgr.I02598 Eucalyptus grandis Eucgr.I02598 I 0.771
Solyc04g076680.2 Solanum lycopersicum Solyc04g076680.2 I 0.771
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.771
PK27158.1 Cannabis sativa PK27158.1 I 0.771
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.771
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.771
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.771
ANR1 Arabidopsis thaliana AT2G14210 I 0.771
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.771
PGSC0003DMG400009349 Solanum tuberosum PGSC0003DMG400009349 I 0.771
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.750
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.750
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.750
orange1.1g037016m.g Citrus sinensis orange1.1g037016m.g I 0.750
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.750
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.750
Ca_19854 Cicer arietinum Ca_19854 I 0.750
TCM_007324 Theobroma cacao TCM_007324 I 0.750
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.750
AGL16 Arabidopsis lyrata fgenesh2_kg.5__2158__AT3G57230.1 I 0.750
cassava33801.m1 Manihot esculenta cassava33801.m1 I 0.750
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.750
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.750
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.750
Bo7g025330 Brassica oleracea Bo7g025330 I 0.750
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.750
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.729
Sb04g028960 Sorghum bicolor Sb04g028960 I 0.729
mgf019667m Mimulus guttatus mgf019667m I 0.729
mgf007519m Mimulus guttatus mgf007519m I 0.729
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.729
Cla023427 Citrullus lanatus Cla023427 I 0.729
Bostr.20505s0022 Boechera stricta Bostr.20505s0022 I 0.729
Cagra.0578s0054 Capsella grandiflora Cagra.0578s0054 I 0.729
Gorai.007G360800 Gossypium raimondii Gorai.007G360800 I 0.729
cassava45813.m1 Manihot esculenta cassava45813.m1 I 0.729
gene26429-v1.0-hybrid Fragaria vesca gene26429-v1.0-hybrid I 0.729
Si019880m.g Setaria italica Si019880m.g I 0.729
TCM_024579 Theobroma cacao TCM_024579 I 0.729
Pm021962 Prunus mume Pm021962 I 0.729
Ciclev10016394m.g Citrus clementina Ciclev10016394m.g I 0.729
VIT_00s0211g00180 Vitis vinifera VIT_00s0211g00180 I 0.729
Lus10005325.g Linum usitatissimum Lus10005325.g I 0.729
Eucgr.G03284 Eucalyptus grandis Eucgr.G03284 I 0.729
VIT_03s0097g00160 Vitis vinifera VIT_03s0097g00160 I 0.729
Solyc02g091550.1 Solanum lycopersicum Solyc02g091550.1 I 0.729
Carubv10017951m.g Capsella rubella Carubv10017951m.g I 0.729
Solyc12g088080.1 Solanum lycopersicum Solyc12g088080.1 I 0.729
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.729
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.729
Pavir.Ab02921 Panicum virgatum Pavir.Ab02921 I 0.729
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.729
OB04G32080 Oryza brachyantha OB04G32080 I 0.729
MTR_2g009890 Medicago truncatula MTR_2g009890 I 0.729
Bra011509 Brassica rapa Bra011509 I 0.729
Bo4g111230 Brassica oleracea Bo4g111230 I 0.729
Thhalv10000598m.g Eutrema salsugineum Thhalv10000598m.g I 0.729
orange1.1g040075m.g Citrus sinensis orange1.1g040075m.g I 0.729
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.729
TT16 Arabidopsis lyrata fgenesh2_kg.6__2319__AT5G23260.2 I 0.729
Lus10039580.g Linum usitatissimum Lus10039580.g I 0.729
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.729
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.729
Bra007324 Brassica rapa Bra007324 I 0.729
AGL16 Arabidopsis thaliana AT3G57230 D 0.729
Bo8g091790 Brassica oleracea Bo8g091790 I 0.729
POPTR_0002s11040 Populus trichocarpa POPTR_0002s11040 I 0.717
ENSMICG00000005703 Microcebus murinus ENSMICG00000005703 I 0.711
Carubv10002792m.g Capsella rubella Carubv10002792m.g I 0.708
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.708
Carubv10006453m.g Capsella rubella Carubv10006453m.g I 0.708
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.708
Cagra.5414s0059 Capsella grandiflora Cagra.5414s0059 I 0.708
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.708
LjSGA_021013.1 Lotus japonicus LjSGA_021013.1 I 0.708
Bostr.20505s0007 Boechera stricta Bostr.20505s0007 I 0.708
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.708
Cagra.1080s0003 Capsella grandiflora Cagra.1080s0003 I 0.708
LjSGA_019451.1 Lotus japonicus LjSGA_019451.1 I 0.708
Thhalv10026139m.g Eutrema salsugineum Thhalv10026139m.g I 0.708
PK08595.1 Cannabis sativa PK08595.1 I 0.708
PK27820.1 Cannabis sativa PK27820.1 I 0.708
Cagra.4348s0011 Capsella grandiflora Cagra.4348s0011 I 0.708
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.708
MDP0000234911 Malus domestica MDP0000234911 I 0.708
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.708
MDP0000475549 Malus domestica MDP0000475549 I 0.708
evm.TU.supercontig_177.14 Carica papaya evm.TU.supercontig_177.14 I 0.708
MDP0000228942 Malus domestica MDP0000228942 I 0.708
MDP0000144516 Malus domestica MDP0000144516 I 0.708
Gorai.010G032700 Gossypium raimondii Gorai.010G032700 I 0.708
Gorai.009G227500 Gossypium raimondii Gorai.009G227500 I 0.708
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
MDP0000783966 Malus domestica MDP0000783966 I 0.708
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.708
Pavir.Gb01527 Panicum virgatum Pavir.Gb01527 I 0.708
Bostr.19427s0033 Boechera stricta Bostr.19427s0033 I 0.708
SapurV1A.0004s0740 Salix purpurea SapurV1A.0004s0740 I 0.708
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.708
Eucgr.F02161 Eucalyptus grandis Eucgr.F02161 I 0.708
Pavir.Ga01454 Panicum virgatum Pavir.Ga01454 I 0.708
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.708
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.708
Pavir.Aa00445 Panicum virgatum Pavir.Aa00445 I 0.708
Carubv10023996m.g Capsella rubella Carubv10023996m.g I 0.708
Ca_24925 Cicer arietinum Ca_24925 I 0.708
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.708
GLYMA14G36221 Glycine max GLYMA14G36221 I 0.708
GRMZM2G032905 Zea mays GRMZM2G032905 I 0.708
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.708
GLYMA02G38091 Glycine max GLYMA02G38091 I 0.708
AGL21 Arabidopsis lyrata fgenesh2_kg.7__253__AT4G37940.1 I 0.708
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.708
GRMZM2G044408 Zea mays GRMZM2G044408 I 0.708
GRMZM2G055782 Zea mays GRMZM2G055782 I 0.708
OBART04G25610 Oryza barthii OBART04G25610 I 0.708
OGLUM03G34160 Oryza glumaepatula OGLUM03G34160 I 0.708
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.708
LPERR04G11770 Leersia perrieri LPERR04G11770 I 0.708
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.708
LPERR02G25570 Leersia perrieri LPERR02G25570 I 0.708
F775_15097 Aegilops tauschii F775_15097 I 0.708
BRADI5G21700 Brachypodium distachyon BRADI5G21700 I 0.708
Bo1g003270 Brassica oleracea Bo1g003270 I 0.708
Bo1g007520 Brassica oleracea Bo1g007520 I 0.708
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.708
TT16 Arabidopsis thaliana AT5G23260 I 0.708
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.708
AGL21 Arabidopsis thaliana AT4G37940 I 0.708
Bo3g153080 Brassica oleracea Bo3g153080 I 0.708
Bo6g072840 Brassica oleracea Bo6g072840 I 0.708
Bra014628 Brassica rapa Bra014628 I 0.708
Bra017638 Brassica rapa Bra017638 I 0.708
Bra011797 Brassica rapa Bra011797 I 0.708
Bra010623 Brassica rapa Bra010623 I 0.708
Bo7g116760 Brassica oleracea Bo7g116760 I 0.708
Bra003278 Brassica rapa Bra003278 I 0.708
Bostr.10199s0104 Boechera stricta Bostr.10199s0104 I 0.708
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.708
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.708
Ca_14956 Cicer arietinum Ca_14956 I 0.708
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.708
VIT_00s0211g00150 Vitis vinifera VIT_00s0211g00150 I 0.708
TCM_036568 Theobroma cacao TCM_036568 I 0.708
TCM_000931 Theobroma cacao TCM_000931 I 0.708
TCM_034549 Theobroma cacao TCM_034549 I 0.708
Cla014307 Citrullus lanatus Cla014307 I 0.708
Pm004349 Prunus mume Pm004349 I 0.708
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.708
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.708
29596.m000699 Ricinus communis 29596.m000699 I 0.708
Cucsa.103820 Cucumis sativus Cucsa.103820 I 0.708
OMERI03G31620 Oryza meridionalis OMERI03G31620 I 0.708
Si012517m.g Setaria italica Si012517m.g I 0.708
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.708
MADS31 Oryza sativa OS04G0614100 I 0.708
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.708
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.708
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.708
OPUNC04G12890 Oryza punctata OPUNC04G12890 I 0.708
SELMODRAFT_450937 Selaginella moellendorffii SELMODRAFT_450937 I 0.708
PGSC0003DMG400023729 Solanum tuberosum PGSC0003DMG400023729 I 0.708
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.708
Sb06g019040 Sorghum bicolor Sb06g019040 I 0.708
SELMODRAFT_450818 Selaginella moellendorffii SELMODRAFT_450818 I 0.708
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
POPTR_0005s19440 Populus trichocarpa POPTR_0005s19440 I 0.708
PK10580.1 Cannabis sativa PK10580.1 I 0.704
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.702
gene22696-v1.0-hybrid Fragaria vesca gene22696-v1.0-hybrid I 0.702
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.702