MDP0000147667 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000147667 T258658_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.783 0.783
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000147667 MADS box 91 136

Links

Other MADS box family TFs
Other Malus domestica TFs

95 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL65 Arabidopsis thaliana AT1G18750 D 0.750
29813.m001508 Ricinus communis 29813.m001508 I 0.870
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.848
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.783
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.750
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.750
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.848
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.783
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.729
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.935
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.750
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.848
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.848
30138.m004061 Ricinus communis 30138.m004061 I 0.750
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.848
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.870
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.729
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.729
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.729
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.870
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.804
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.708
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.750
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.729
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.848
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.750
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.739
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.717
PK03147.1 Cannabis sativa PK03147.1 I 0.935
PK21701.1 Cannabis sativa PK21701.1 I 0.708
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.702
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.913
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.935
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.702
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.702
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.870
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.870
MDP0000146231 Malus domestica MDP0000146231 I 0.978
MDP0000146415 Malus domestica MDP0000146415 I 1.000
MDP0000773068 Malus domestica MDP0000773068 I 1.000
MDP0000919323 Malus domestica MDP0000919323 I 1.000
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.729
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.935
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.739
Pm006479 Prunus mume Pm006479 I 0.978
Bra004393 Brassica rapa Bra004393 I 0.804
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.717
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.717
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.729
Bra031049 Brassica rapa Bra031049 I 0.771
Bra025685 Brassica rapa Bra025685 I 0.766
Bra024792 Brassica rapa Bra024792 I 0.848
Bra017404 Brassica rapa Bra017404 I 0.848
Bra016544 Brassica rapa Bra016544 I 0.771
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.787
Bo8g104060 Brassica oleracea Bo8g104060 I 0.771
Bo8g068060 Brassica oleracea Bo8g068060 I 0.771
Bo7g080890 Brassica oleracea Bo7g080890 I 0.848
Bo6g109050 Brassica oleracea Bo6g109050 I 0.804
AGL30 Arabidopsis thaliana AT2G03060 I 0.870
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.804
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.848
F775_13266 Aegilops tauschii F775_13266 I 0.717
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.723
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.739
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.761
TCM_011687 Theobroma cacao TCM_011687 I 0.891
TCM_014051 Theobroma cacao TCM_014051 I 0.708
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.717
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.717
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.717
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.717
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.708
Ca_16376 Cicer arietinum Ca_16376 I 0.913
Ca_18082 Cicer arietinum Ca_18082 I 0.935
Cla010361 Citrullus lanatus Cla010361 I 0.913
Cla018884 Citrullus lanatus Cla018884 I 0.729
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.978
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.739
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.935
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.935
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.913
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.913
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.870
AGL94 Arabidopsis thaliana AT1G69540 N 0.761
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.870
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.851
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.891
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.826
Bo9g072860 Brassica oleracea Bo9g072860 N 0.870
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.766
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.783
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.804
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.717
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.913