Thhalv10027038m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10027038m.g T259193_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.886 0.886
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10027038m MADS box 1 36

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_026842 Theobroma cacao TCM_026842 I 0.829
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.800
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.793
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.741
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.724
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.724
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.714
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.708
Bra018490 Brassica rapa Bra018490 I 0.708
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.706