Cla005887 (Citrullus lanatus)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Cla005887 T261243_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla005887 MBD 172 246

Links

Other MBD family TFs
Other Citrullus lanatus TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N 0.778
Bo8g030620 Brassica oleracea Bo8g030620 N 0.722
Bra038936 Brassica rapa Bra038936 N 0.722
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N 0.847
Ca_15552 Cicer arietinum Ca_15552 N 0.778
Ca_15553 Cicer arietinum Ca_15553 N 0.750
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N 0.859
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N 0.833
Cucsa.209330 Cucumis sativus Cucsa.209330 N 0.780
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N 0.778
gene12231-v1.0-hybrid Fragaria vesca gene12231-v1.0-hybrid N 0.743
GLYMA07G15620 Glycine max GLYMA07G15620 N 0.736
GLYMA01G00520 Glycine max GLYMA01G00520 N 0.722
Gorai.009G001500 Gossypium raimondii Gorai.009G001500 N 0.804
Lus10021593.g Linum usitatissimum Lus10021593.g N 0.778
Lus10017146.g Linum usitatissimum Lus10017146.g N 0.778
chr2.CM0373.530.nc Lotus japonicus chr2.CM0373.530.nc N 0.750
MDP0000222923 Malus domestica MDP0000222923 N 0.722
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N 0.792
MTR_6g093020 Medicago truncatula MTR_6g093020 N 0.778
mgf002635m Mimulus guttatus mgf002635m N 0.764
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N 0.736
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N 0.750
POPTR_0006s07730 Populus trichocarpa POPTR_0006s07730 N 0.819
POPTR_0018s14340 Populus trichocarpa POPTR_0018s14340 N 0.833
Pm008965 Prunus mume Pm008965 N 0.778
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N 0.778
29843.m000288 Ricinus communis 29843.m000288 N 0.732
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N 0.806
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N 0.750
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N 0.750
TCM_039691 Theobroma cacao TCM_039691 N 0.861
MBD02 Vitis vinifera VIT_11s0065g01010 N 0.803