cassava11725.valid.m1 (Manihot esculenta)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 cassava11725.valid.m1 T261341_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava11725.valid.m1 MBD 173 246

Links

Other MBD family TFs
Other Manihot esculenta TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29843.m000288 Ricinus communis 29843.m000288 N 0.847
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N 0.819
Bo8g030620 Brassica oleracea Bo8g030620 N 0.736
Bostr.29044s0085 Boechera stricta Bostr.29044s0085 N 0.806
Bra038936 Brassica rapa Bra038936 N 0.736
BRADI1G34320 Brachypodium distachyon BRADI1G34320 N 0.736
Cagra.2178s0009 Capsella grandiflora Cagra.2178s0009 N 0.708
Ca_15552 Cicer arietinum Ca_15552 N 0.875
Ca_15553 Cicer arietinum Ca_15553 N 0.847
chr2.CM0373.530.nc Lotus japonicus chr2.CM0373.530.nc N 0.806
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N 0.861
Cla005887 Citrullus lanatus Cla005887 N 0.792
Cucsa.209330 Cucumis sativus Cucsa.209330 N 0.712
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N 0.875
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N 0.875
gene12231-v1.0-hybrid Fragaria vesca gene12231-v1.0-hybrid N 0.736
GLYMA01G00520 Glycine max GLYMA01G00520 N 0.806
GLYMA07G15620 Glycine max GLYMA07G15620 N 0.819
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N 0.792
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N 0.819
Lus10017146.g Linum usitatissimum Lus10017146.g N 0.833
Lus10021593.g Linum usitatissimum Lus10021593.g N 0.792
MBD02 Vitis vinifera VIT_11s0065g01010 N 0.875
MBD02 Arabidopsis lyrata scaffold_703403.1 N 0.778
MBD2 Arabidopsis thaliana AT5G35330 N 0.764
MDP0000222923 Malus domestica MDP0000222923 N 0.778
mgf002635m Mimulus guttatus mgf002635m N 0.806
MTR_6g093020 Medicago truncatula MTR_6g093020 N 0.778
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N 0.847
Pavir.Ba01676 Panicum virgatum Pavir.Ba01676 N 0.708
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N 0.764
Pm008965 Prunus mume Pm008965 N 0.847
POPTR_0006s07730 Populus trichocarpa POPTR_0006s07730 N 0.889
POPTR_0018s14340 Populus trichocarpa POPTR_0018s14340 N 0.861
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N 0.847
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N 0.903
Sb02g028780 Sorghum bicolor Sb02g028780 N 0.708
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N 0.764
TCM_039691 Theobroma cacao TCM_039691 N 0.861
Thhalv10003457m.g Eutrema salsugineum Thhalv10003457m.g N 0.792