CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT1G72740
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT1G72740
T266370_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
(Direct)
(Direct)
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.804
0.766
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.728
0.702
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.673
0.723
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G72740.1
Myb
5
57
KLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLS
AT1G72740.2
Myb
5
57
KLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLS
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
194 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy