PCL1 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT3G46640 T266463_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G05090
M02305_2.00
Arabidopsis thaliana
NHAGATHCKNN

NNMGDATCTDN
PBM
Weirauch et al.(2014)
pTH7104
0.827 0.957
ARR14
M00873_2.00
Arabidopsis thaliana
NNAGATHCKS

SMGDATCTNN
PBM
Franco-Zorrilla et al.(2014)
ARR14
0.662 0.660
ARR14
M02293_2.00
Arabidopsis thaliana
NAGATHYBNN

NNVRDATCTN
PBM
Weirauch et al.(2014)
pTH7531
0.662 0.660
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G46640.1 Myb 146 196
AT3G46640.2 Myb 146 196
AT3G46640.3 Myb 146 196

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

305 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.000
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.000
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.000
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.000
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.000
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.000
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.000
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.000
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.000
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.000
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.000
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.000
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.000
Pm013703 Prunus mume Pm013703 N 0.000
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.000
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.000
mgf010516m Mimulus guttatus mgf010516m N 0.000
mgf025287m Mimulus guttatus mgf025287m N 0.000
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.000
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.000
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.000
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.000
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.000
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.000
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.000
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.000
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.000
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.000
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.000
Thhalv10022530m.g Eutrema salsugineum Thhalv10022530m.g N 0.000
PK27100.1 Cannabis sativa PK27100.1 N 0.000
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.000
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.000
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.000
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.000
MDP0000197332 Malus domestica MDP0000197332 N 0.000
MDP0000394762 Malus domestica MDP0000394762 N 0.000
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.000
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.000
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.000
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.000
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.000
PK28412.1 Cannabis sativa PK28412.1 N 0.000
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.000
Bo4g107870 Brassica oleracea Bo4g107870 N 0.000
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.000
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.000
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.000
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.000
OB08G27840 Oryza brachyantha OB08G27840 N 0.000
OB08G27850 Oryza brachyantha OB08G27850 N 0.000
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.000
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.000
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.000
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.000
GLYMA13G44351 Glycine max GLYMA13G44351 N 0.000
Bo4g137780 Brassica oleracea Bo4g137780 N 0.000
Bo6g067130 Brassica oleracea Bo6g067130 N 0.000
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.000
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.000
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.000
GLYMA07G03280 Glycine max GLYMA07G03280 N 0.000
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.000
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.000
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.000
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.000
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.000
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.000
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.000
TCM_027266 Theobroma cacao TCM_027266 N 0.000
TCM_038144 Theobroma cacao TCM_038144 N 0.000
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.000
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.000
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.000
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.000
Si034159m.g Setaria italica Si034159m.g N 0.000
Si000761m.g Setaria italica Si000761m.g N 0.000
Si000431m.g Setaria italica Si000431m.g N 0.000
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.000
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.000
POPTR_0018s12680 Populus trichocarpa POPTR_0018s12680 N 0.000
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.000
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.000
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.000
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.000
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.000
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.000