AtMYB40 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G14340 T266531_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Member of the R2R3 factor gene family.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB40
M07126_2.00		 Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB40_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.663 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G14340.1 Myb 14 61
AT5G14340.1 Myb 67 111
AT5G14340.2 Myb 6 33

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

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81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action