AtMYB40 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G14340 T266531_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Member of the R2R3 factor gene family.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB40
M07126_2.00		 Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB40_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.663 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G14340.1 Myb 14 61
AT5G14340.1 Myb 67 111
AT5G14340.2 Myb 6 33

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.2902s0170 Boechera stricta Bostr.2902s0170 I 0.909
Cagra.3166s0041 Capsella grandiflora Cagra.3166s0041 I 0.909
Thhalv10014425m.g Eutrema salsugineum Thhalv10014425m.g I 0.909
Bra008764 Brassica rapa Bra008764 I 0.889
Bo9g166000 Brassica oleracea Bo9g166000 I 0.880
Bo3g009730 Brassica oleracea Bo3g009730 I 0.880
Bra006249 Brassica rapa Bra006249 I 0.880
Bo4g101470 Brassica oleracea Bo4g101470 I 0.856
PGSC0003DMG400011976 Solanum tuberosum PGSC0003DMG400011976 I 0.798
GLYMA19G07830 Glycine max GLYMA19G07830 I 0.790
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.783
GLYMA05G06410 Glycine max GLYMA05G06410 I 0.781
GLYMA16G06900 Glycine max GLYMA16G06900 I 0.776
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I 0.774
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I 0.773
Ca_19393 Cicer arietinum Ca_19393 I 0.772
MDP0000241111 Malus domestica MDP0000241111 I 0.764
MDP0000303239 Malus domestica MDP0000303239 I 0.764
cassava3745.m1 Manihot esculenta cassava3745.m1 I 0.761
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I 0.761
TCM_017051 Theobroma cacao TCM_017051 I 0.761
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I 0.760
POPTR_0001s36220 Populus trichocarpa POPTR_0001s36220 I 0.757
Lus10032117.g Linum usitatissimum Lus10032117.g I 0.753
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I 0.752
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I 0.752
Pm015564 Prunus mume Pm015564 I 0.752
cassava17364.m1 Manihot esculenta cassava17364.m1 I 0.752
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I 0.750
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I 0.749
Gorai.007G074500 Gossypium raimondii Gorai.007G074500 I 0.748
mgf018940m Mimulus guttatus mgf018940m I 0.744
AtMYB40 Vitis vinifera VIT_14s0219g00050 I 0.744
Aquca_011_00323 Aquilegia coerulea Aquca_011_00323 I 0.739
Solyc02g093740.2 Solanum lycopersicum Solyc02g093740.2 I 0.736
PGSC0003DMG400012648 Solanum tuberosum PGSC0003DMG400012648 I 0.736
Lus10014569.g Linum usitatissimum Lus10014569.g I 0.733
Cla004104 Citrullus lanatus Cla004104 I 0.731
Cucsa.156340 Cucumis sativus Cucsa.156340 I 0.731
29929.m004749 Ricinus communis 29929.m004749 I 0.730
SapurV1A.0136s0070 Salix purpurea SapurV1A.0136s0070 I 0.730
mgf025944m Mimulus guttatus mgf025944m N 0.729
e_gw1.1.4.1 Physcomitrella patens e_gw1.1.4.1 N 0.713
cassava15064.m1 Manihot esculenta cassava15064.m1 I 0.711
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.709
PGSC0003DMG400004610 Solanum tuberosum PGSC0003DMG400004610 N 0.709
AMTR_s00009p00257950 Amborella trichopoda AMTR_s00009p00257950 N 0.706
evm.TU.supercontig_34.3 Carica papaya evm.TU.supercontig_34.3 N 0.706
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.705
MDP0000911051 Malus domestica MDP0000911051 N 0.705
MLOC_12474 Hordeum vulgare MLOC_12474 N 0.703
Traes_2DL_0E9BE0271 Triticum aestivum Traes_2DL_0E9BE0271 N 0.703
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.702
GLYMA05G03780 Glycine max GLYMA05G03780 I 0.702
Traes_1BL_A44464337 Triticum aestivum Traes_1BL_A44464337 N 0.699
MLOC_59184 Hordeum vulgare MLOC_59184 N 0.699
MYB3 Arabidopsis thaliana AT1G22640 D 0.698
MDP0000119369 Malus domestica MDP0000119369 N 0.693
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.691
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I 0.691
Traes_5AS_D238844BB Triticum aestivum Traes_5AS_D238844BB N 0.688
mgf025004m Mimulus guttatus mgf025004m I 0.687
Aquca_011_00322 Aquilegia coerulea Aquca_011_00322 I 0.687
GSMUA_Achr6G06800_001 Musa acuminata GSMUA_Achr6G06800_001 I 0.681
Traes_4BL_61E35C455 Triticum aestivum Traes_4BL_61E35C455 N 0.675
gene24516-v1.0-hybrid Fragaria vesca gene24516-v1.0-hybrid N 0.675
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.675
OS04G0517100 Oryza sativa OS04G0517100 N 0.675
MLOC_59663 Hordeum vulgare MLOC_59663 I 0.672
GSMUA_Achr9G15640_001 Musa acuminata GSMUA_Achr9G15640_001 I 0.670
PGSC0003DMG400015668 Solanum tuberosum PGSC0003DMG400015668 I 0.670
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.670
Solyc04g014470.2 Solanum lycopersicum Solyc04g014470.2 I 0.670
Solyc11g011050.1 Solanum lycopersicum Solyc11g011050.1 I 0.670
mg021480m Mimulus guttatus mg021480m N 0.667
OLONG_005719 Oryza longistaminata OLONG_005719 N 0.664
MYB43 Arabidopsis thaliana AT5G16600 D 0.663
Cagra.0434s0026 Capsella grandiflora Cagra.0434s0026 I 0.663
Bostr.2902s0397 Boechera stricta Bostr.2902s0397 I 0.663
Carubv10001378m.g Capsella rubella Carubv10001378m.g I 0.663
MYB43 Arabidopsis lyrata scaffold_601700.1 I 0.663