Bo4g101470 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo4g101470 T267320_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB40
M07126_2.00 		Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB40_col_a 		0.856 0.957
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.661 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g101470.1 Myb 14 61
Bo4g101470.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3166s0041 Capsella grandiflora Cagra.3166s0041 I 0.856
Bostr.2902s0170 Boechera stricta Bostr.2902s0170 I 0.856
AtMYB40 Arabidopsis thaliana AT5G14340 D 0.856
Thhalv10014425m.g Eutrema salsugineum Thhalv10014425m.g I 0.856
Bra008764 Brassica rapa Bra008764 I 0.836
Bo9g166000 Brassica oleracea Bo9g166000 I 0.827
Bo3g009730 Brassica oleracea Bo3g009730 I 0.827
Bra006249 Brassica rapa Bra006249 I 0.827
PGSC0003DMG400011976 Solanum tuberosum PGSC0003DMG400011976 I 0.765
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.751
GLYMA16G06900 Glycine max GLYMA16G06900 I 0.744
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I 0.741
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I 0.741
GLYMA19G07830 Glycine max GLYMA19G07830 I 0.737
MDP0000303239 Malus domestica MDP0000303239 I 0.731
MDP0000241111 Malus domestica MDP0000241111 I 0.731
GLYMA05G06410 Glycine max GLYMA05G06410 I 0.728
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I 0.728
cassava3745.m1 Manihot esculenta cassava3745.m1 I 0.728
TCM_017051 Theobroma cacao TCM_017051 I 0.728
SapurV1A.0136s0070 Salix purpurea SapurV1A.0136s0070 I 0.727
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I 0.727
POPTR_0001s36220 Populus trichocarpa POPTR_0001s36220 I 0.724
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I 0.719
cassava17364.m1 Manihot esculenta cassava17364.m1 I 0.719
Pm015564 Prunus mume Pm015564 I 0.719
Ca_19393 Cicer arietinum Ca_19393 I 0.719
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I 0.719
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I 0.718
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I 0.716
Gorai.007G074500 Gossypium raimondii Gorai.007G074500 I 0.715
mgf018940m Mimulus guttatus mgf018940m I 0.712
AtMYB40 Vitis vinifera VIT_14s0219g00050 I 0.712
Aquca_011_00323 Aquilegia coerulea Aquca_011_00323 I 0.706
PGSC0003DMG400012648 Solanum tuberosum PGSC0003DMG400012648 I 0.703
Solyc02g093740.2 Solanum lycopersicum Solyc02g093740.2 I 0.703
Lus10032117.g Linum usitatissimum Lus10032117.g I 0.700
Lus10014569.g Linum usitatissimum Lus10014569.g I 0.700
29929.m004749 Ricinus communis 29929.m004749 I 0.698
Cla004104 Citrullus lanatus Cla004104 I 0.698
Cucsa.156340 Cucumis sativus Cucsa.156340 I 0.698
cassava15064.m1 Manihot esculenta cassava15064.m1 I 0.688
MYB43 Arabidopsis thaliana AT5G16600 D 0.661
Bostr.2902s0397 Boechera stricta Bostr.2902s0397 I 0.661
MYB43 Arabidopsis lyrata scaffold_601700.1 I 0.661
Cagra.0434s0026 Capsella grandiflora Cagra.0434s0026 I 0.661
Carubv10001378m.g Capsella rubella Carubv10001378m.g I 0.661