Bo9g166000 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo9g166000 T267646_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB40
M07126_2.00 		Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB40_col_a 		0.880 0.967
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.674 0.739
PK21166.1
M01281_2.00 		Cannabis sativa
HACCWAMY
RKTWGGTD		 PBM
Lambert et al.(2019)
pTH11255 		0.668 0.750
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g166000.1 Myb 14 61
Bo9g166000.1 Myb 67 111

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra008764 Brassica rapa Bra008764 I 0.900
Bra006249 Brassica rapa Bra006249 I 0.891
Bo3g009730 Brassica oleracea Bo3g009730 I 0.891
AtMYB40 Arabidopsis thaliana AT5G14340 D 0.880
Thhalv10014425m.g Eutrema salsugineum Thhalv10014425m.g I 0.880
Bostr.2902s0170 Boechera stricta Bostr.2902s0170 I 0.880
Cagra.3166s0041 Capsella grandiflora Cagra.3166s0041 I 0.880
Bo4g101470 Brassica oleracea Bo4g101470 I 0.827
PGSC0003DMG400011976 Solanum tuberosum PGSC0003DMG400011976 I 0.809
GLYMA19G07830 Glycine max GLYMA19G07830 I 0.801
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.794
GLYMA05G06410 Glycine max GLYMA05G06410 I 0.792
GLYMA16G06900 Glycine max GLYMA16G06900 I 0.787
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I 0.784
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I 0.784
Ca_19393 Cicer arietinum Ca_19393 I 0.782
MDP0000303239 Malus domestica MDP0000303239 I 0.774
MDP0000241111 Malus domestica MDP0000241111 I 0.774
TCM_017051 Theobroma cacao TCM_017051 I 0.772
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I 0.772
cassava3745.m1 Manihot esculenta cassava3745.m1 I 0.771
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I 0.771
POPTR_0001s36220 Populus trichocarpa POPTR_0001s36220 I 0.767
Lus10032117.g Linum usitatissimum Lus10032117.g I 0.764
cassava17364.m1 Manihot esculenta cassava17364.m1 I 0.763
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I 0.763
Pm015564 Prunus mume Pm015564 I 0.763
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I 0.763
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I 0.761
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I 0.760
Gorai.007G074500 Gossypium raimondii Gorai.007G074500 I 0.758
AtMYB40 Vitis vinifera VIT_14s0219g00050 I 0.755
mgf018940m Mimulus guttatus mgf018940m I 0.755
Solyc02g093740.2 Solanum lycopersicum Solyc02g093740.2 I 0.755
PGSC0003DMG400012648 Solanum tuberosum PGSC0003DMG400012648 I 0.755
Aquca_011_00323 Aquilegia coerulea Aquca_011_00323 I 0.750
Lus10014569.g Linum usitatissimum Lus10014569.g I 0.744
Cucsa.156340 Cucumis sativus Cucsa.156340 I 0.742
Cla004104 Citrullus lanatus Cla004104 I 0.742
29929.m004749 Ricinus communis 29929.m004749 I 0.741
SapurV1A.0136s0070 Salix purpurea SapurV1A.0136s0070 I 0.741
cassava15064.m1 Manihot esculenta cassava15064.m1 I 0.721
GSMUA_Achr6G06800_001 Musa acuminata GSMUA_Achr6G06800_001 I 0.701
Aquca_011_00322 Aquilegia coerulea Aquca_011_00322 I 0.697
GSMUA_Achr9G15640_001 Musa acuminata GSMUA_Achr9G15640_001 I 0.681
Solyc11g011050.1 Solanum lycopersicum Solyc11g011050.1 I 0.680
Solyc04g014470.2 Solanum lycopersicum Solyc04g014470.2 I 0.680
PGSC0003DMG400015668 Solanum tuberosum PGSC0003DMG400015668 I 0.680
mgf025004m Mimulus guttatus mgf025004m I 0.678
Carubv10001378m.g Capsella rubella Carubv10001378m.g I 0.674
MYB43 Arabidopsis thaliana AT5G16600 D 0.674
Bostr.2902s0397 Boechera stricta Bostr.2902s0397 I 0.674
MYB43 Arabidopsis lyrata scaffold_601700.1 I 0.674
Cagra.0434s0026 Capsella grandiflora Cagra.0434s0026 I 0.674
AtMYB40 Populus trichocarpa POPTR_0008s18110 I 0.673
Cagra.1300s0004 Capsella grandiflora Cagra.1300s0004 I 0.671
Bo6g099800 Brassica oleracea Bo6g099800 I 0.671
Bra004155 Brassica rapa Bra004155 I 0.671
Bostr.26959s0295 Boechera stricta Bostr.26959s0295 I 0.671
Carubv10020766m.g Capsella rubella Carubv10020766m.g I 0.671
SapurV1A.0206s0260 Salix purpurea SapurV1A.0206s0260 I 0.670
GSMUA_AchrUn_randomG11880_001 Musa acuminata GSMUA_AchrUn_randomG11880_001 N 0.669
MYB20 Arabidopsis lyrata scaffold_201335.1 I 0.668
Pavir.Fb01563 Panicum virgatum Pavir.Fb01563 I 0.668
Thhalv10019852m.g Eutrema salsugineum Thhalv10019852m.g I 0.668
GSMUA_Achr5G23110_001 Musa acuminata GSMUA_Achr5G23110_001 I 0.668
Cucsa.375180 Cucumis sativus Cucsa.375180 I 0.668
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.668
gene30520-v1.0-hybrid Fragaria vesca gene30520-v1.0-hybrid I 0.668
PK21166.1 Cannabis sativa PK21166.1 D 0.668
Si014144m.g Setaria italica Si014144m.g I 0.668
AMTR_s00049p00074250 Amborella trichopoda AMTR_s00049p00074250 I 0.668
MYB43 Vitis vinifera VIT_14s0006g00450 I 0.668
MYB20 Arabidopsis thaliana AT1G66230 I 0.663
Bo2g013190 Brassica oleracea Bo2g013190 I 0.661