Bra012919 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra012919 T267851_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.700 0.804
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR

YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.700 0.804
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN

NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.700 0.804
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH

DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.700 0.804
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012919.1-P Myb 5 56

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo1g081300 Brassica oleracea Bo1g081300 I 0.675
Bo3g096520 Brassica oleracea Bo3g096520 I 0.670
Bo7g099090 Brassica oleracea Bo7g099090 I 0.901
Bo8g079140 Brassica oleracea Bo8g079140 N 0.707
Bo9g019040 Brassica oleracea Bo9g019040 I 0.670
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.709
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.709
Bra024438 Brassica rapa Bra024438 I 0.670
Bra029978 Brassica rapa Bra029978 I 0.675
Bra037837 Brassica rapa Bra037837 I 0.670
Bra037839 Brassica rapa Bra037839 I 0.670
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.709
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.709
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.709
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.709
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.678
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I 0.668
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.691
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.681
MDP0000234807 Malus domestica MDP0000234807 I 0.662
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.664
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.702
Pm021139 Prunus mume Pm021139 I 0.668
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.664
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.668
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.664
TCM_007242 Theobroma cacao TCM_007242 I 0.691
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.709
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.709
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.691
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.700
TRB2 Arabidopsis thaliana AT5G67580 D 0.700
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.709
TRB3 Arabidopsis thaliana AT3G49850 I 0.670