Bra039067 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra039067 T268138_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN

NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.851 0.968
MYB05_ANTMA
M11067_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.825 0.946
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT

ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.742 0.849
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH

DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.742 0.849
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY

RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.742 0.849
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN

NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.661 0.763
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH

DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.661 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra039067.1-P Myb 22 69
Bra039067.1-P Myb 75 120

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_14522 Aegilops tauschii F775_14522 N 0.000
MLOC_14401 Hordeum vulgare MLOC_14401 N 0.000
Si039882m.g Setaria italica Si039882m.g N 0.000
TRAES3BF012200010CFD_g Triticum aestivum TRAES3BF012200010CFD_g N 0.000
TRAES3BF012300030CFD_g Triticum aestivum TRAES3BF012300030CFD_g N 0.000
Traes_3AL_152A7186A Triticum aestivum Traes_3AL_152A7186A N 0.000
Traes_3B_934488D20 Triticum aestivum Traes_3B_934488D20 N 0.000