CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mybl1
(
Tetraodon nigroviridis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
ENSTNIG00000010104
T270111_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Myb
M00179_2.00
Mus musculus
HAACGGHHNN
NNDDCCGTTD
PBM
Badis et al.(2009)
Myb_1047
0.775
0.836
MYB
M08150_2.00
Homo sapiens
NNCAACTGHN
NDCAGTTGNN
ChIP-seq
Mathelier et al.(2014)
MA0100.3
0.775
0.836
MYB
M09260_2.00
Homo sapiens
NYAACKGYYDNH
DNHRRCMGTTRN
Misc
Kulakovskiy et al.(2013)
MYB_HUMAN.H11MO.0.A
0.775
0.836
Myb
M09261_2.00
Mus musculus
NYAACKGHHNBN
NVNDDCMGTTRN
Misc
Kulakovskiy et al.(2013)
MYB_MOUSE.H11MO.0.A
0.775
0.836
Myb
M09601_2.00
Mus musculus
YAACBGYC
GRCVGTTR
Misc
Heinz et al.(2010)
ERMYB-Myb_GSE22095
0.775
0.836
MYB
M11050_2.00
Homo sapiens
CMVNCAACBGYCNBYNBV
BVNRVNGRCVGTTGNBKG
Transfac
Matys et al.(2006)
V$CMYB_01
0.775
0.836
MYB
M11051_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CMYB_Q5
0.775
0.836
MYB
M11052_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYB_Q3
0.775
0.836
MYB
M11053_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYB_Q4
0.775
0.836
MYB
M11054_2.00
Homo sapiens
VNNAACKDBB
VVHMGTTNNB
Transfac
Matys et al.(2006)
V$MYB_Q6
0.775
0.836
Mybl1
M00180_2.00
Mus musculus
HAACBGHHN
NDDCVGTTD
PBM
Badis et al.(2009)
Mybl1_1717
0.773
0.850
MYBL1
M03349_2.00
Homo sapiens
BVGTTKAACBGY
RCVGTTMAACBV
SELEX
Jolma et al.(2013)
MYBL1_1
0.773
0.850
MYBL1
M03350_2.00
Homo sapiens
RMVGTTAACGGT
ACCGTTAACBKY
SELEX
Jolma et al.(2013)
MYBL1_2
0.773
0.850
MYBL1
M03351_2.00
Homo sapiens
NHRACCGTTWN
NWAACGGTYDN
SELEX
Jolma et al.(2013)
MYBL1_3
0.773
0.850
MYBL1
M03352_2.00
Homo sapiens
HAACSGHHHHAACBGHC
GDCVGTTDDDDCSGTTD
SELEX
Jolma et al.(2013)
MYBL1_4
0.773
0.850
Mybl1
M09262_2.00
Mus musculus
BBNBYAACBGCCNSB
VSNGGCVGTTRVNVV
Misc
Kulakovskiy et al.(2013)
MYBA_MOUSE.H11MO.0.C
0.773
0.850
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000001733
Myb
37
83
KVKWSRDEDEKLRKLVEQHGTDSWKSVTHHFPGRTDGQCQHRWQKVL
ENSTNIP00000001733
Myb
89
135
KGPWTKEEDQKVIDLVQKYGPKRWSVIAKHLQGRIGKQCRERWHNHL
ENSTNIP00000001733
Myb
141
186
KSSWTQEEDRIIYEAHKRLGNRWAEISKLLPGRTDNSIKNHWNSTM
ENSTNIP00000013002
Myb
34
80
KVKWSRDEDEKLRKLVEQHGTDSWKSVTHHFPGRTDGQCQHRWQKVL
ENSTNIP00000013002
Myb
86
132
KGPWTKEEDQKVIDLVQKYGPKRWSVIAKHLQGRIGKQCRERWHNHL
ENSTNIP00000013002
Myb
138
183
KSSWTQEEDRIIYEAHKRLGNRWAEISKLLPGRTDNSIKNHWNSTM
Links
Other
Myb/SANT
family TFs
Other
Tetraodon nigroviridis
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy