MLOC_5590 (Hordeum vulgare)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MLOC_5590 T274509_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.682 0.696
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.682 0.696
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_5590.2 Myb 35 80
MLOC_5590.3 Myb 35 80

Links

Other Myb/SANT family TFs
Other Hordeum vulgare TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIUR3_24634 Triticum urartu TRIUR3_24634 I 0.891
Traes_1BS_24DBD38A8 Triticum aestivum Traes_1BS_24DBD38A8 I 0.891
F775_22448 Aegilops tauschii F775_22448 I 0.885
BRADI2G34670 Brachypodium distachyon BRADI2G34670 I 0.790
LPERR05G03900 Leersia perrieri LPERR05G03900 I 0.751
Si038786m.g Setaria italica Si038786m.g I 0.738
ONIVA05G04710 Oryza nivara ONIVA05G04710 I 0.691
ORUFI05G04560 Oryza rufipogon ORUFI05G04560 I 0.691
OS05G0162800 Oryza sativa OS05G0162800 I 0.691
OBART05G04360 Oryza barthii OBART05G04360 I 0.691
BGIOSGA018757 Oryza indica BGIOSGA018757 I 0.691
Bo4g006930 Brassica oleracea Bo4g006930 I 0.688
Bra004503 Brassica rapa Bra004503 I 0.688
OMERI05G04320 Oryza meridionalis OMERI05G04320 I 0.683
OBART05G04370 Oryza barthii OBART05G04370 I 0.683
OGLUM05G04280 Oryza glumaepatula OGLUM05G04280 I 0.683
OB05G14050 Oryza brachyantha OB05G14050 I 0.683
Bostr.25993s0083 Boechera stricta Bostr.25993s0083 I 0.682
CCA1 Arabidopsis thaliana AT2G46830 D 0.682
CCA1 Arabidopsis lyrata scaffold_403655.1 I 0.682
Cagra.0050s0017 Capsella grandiflora Cagra.0050s0017 I 0.682
Carubv10022831m.g Capsella rubella Carubv10022831m.g I 0.682
Sb01g012460 Sorghum bicolor Sb01g012460 I 0.681
GRMZM2G115070 Zea mays GRMZM2G115070 I 0.681
EuGene.0000110367 Micromonas pusilla EuGene.0000110367 I 0.681
gw1.9.308.1 Chlorella NC64A gw1.9.308.1 I 0.677
CHLREDRAFT_123164 Chlamydomonas reinhardtii CHLREDRAFT_123164 I 0.677
MLOC_59912 Hordeum vulgare MLOC_59912 I 0.677
Lus10005134.g Linum usitatissimum Lus10005134.g I 0.673
Lus10030184.g Linum usitatissimum Lus10030184.g I 0.673
LHY Arabidopsis lyrata fgenesh2_kg.1__131__AT1G01060.3 I 0.673
TRIUR3_06252 Triticum urartu TRIUR3_06252 I 0.664
F775_22242 Aegilops tauschii F775_22242 I 0.664
CHLREDRAFT_112628 Chlamydomonas reinhardtii CHLREDRAFT_112628 I 0.663