PGSC0003DMG400000922 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400000922 T277515_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK05732.1
M01276_2.00 		Cannabis sativa
HNATTCBNN
NNVGAATND		 PBM
Lambert et al.(2019)
pTH11367 		0.718 0.809
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.700 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400002410 Myb 7 58
PGSC0003DMT400002411 Myb 7 58

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc12g006280.1 Solanum lycopersicum Solyc12g006280.1 I 0.763
PGSC0003DMG400028830 Solanum tuberosum PGSC0003DMG400028830 I 0.763
AT4G04555 Arabidopsis thaliana AT4G04555 I 0.731
fgenesh1_pg.C_scaffold_6002971 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6002971 I 0.725
Pm014775 Prunus mume Pm014775 I 0.718
PK05732.1 Cannabis sativa PK05732.1 D 0.718
GLYMA18G14071 Glycine max GLYMA18G14071 I 0.707
Thhalv10008620m.g Eutrema salsugineum Thhalv10008620m.g I 0.700
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I 0.700
Carubv10010057m.g Capsella rubella Carubv10010057m.g I 0.700
Bra026202 Brassica rapa Bra026202 I 0.700
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I 0.700
Bo5g019810 Brassica oleracea Bo5g019810 I 0.700
AT1G14600 Arabidopsis thaliana AT1G14600 D 0.700
MDP0000244794 Malus domestica MDP0000244794 I 0.699
GLYMA08G41735 Glycine max GLYMA08G41735 I 0.699
Aquca_066_00001 Aquilegia coerulea Aquca_066_00001 I 0.687
Lus10001149.g Linum usitatissimum Lus10001149.g I 0.666
Thhalv10017090m.g Eutrema salsugineum Thhalv10017090m.g I 0.666
PRUPE_ppa023518mg Prunus persica PRUPE_ppa023518mg I 0.664
GSMUA_Achr2G10180_001 Musa acuminata GSMUA_Achr2G10180_001 I 0.662