CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0006s23810
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0006s23810
T278312_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.699
0.742
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.676
0.699
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.665
0.613
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM
KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.665
0.613
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.661
0.624
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.661
0.624
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0006s23810.1
Myb
11
58
RGTWTATEDKILTAYVRNYGEGNWARVPKETGLKRCGKSCRLRWLNYL
POPTR_0006s23810.1
Myb
64
109
RGNISPDEEDLIIRLHKLLGNRWALIAGRIPGRTDNEIKNYWNSTL
POPTR_0006s23810.2
Myb
11
32
TVIGTGLKRCGKSCRLRWLNYL
POPTR_0006s23810.2
Myb
38
83
RGNISPDEEDLIIRLHKLLGNRWALIAGRIPGRTDNEIKNYWNSTL
POPTR_0006s23810.3
Myb
11
35
LGFQRKQASLKRCGKSCRLRWLNYL
POPTR_0006s23810.3
Myb
41
86
RGNISPDEEDLIIRLHKLLGNRWALIAGRIPGRTDNEIKNYWNSTL
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
527 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy