POPTR_0012s08190 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0012s08190 T278423_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WER
M11047_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.750 0.849
WER
M11048_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.750 0.849
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH

DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.689 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s08190.1 Myb 11 58
POPTR_0012s08190.1 Myb 64 109

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.742
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.771
Bo2g012170 Brassica oleracea Bo2g012170 I 0.750
Bo7g090950 Brassica oleracea Bo7g090950 I 0.709
Bo9g165670 Brassica oleracea Bo9g165670 I 0.733
Bostr.0556s0467 Boechera stricta Bostr.0556s0467 I 0.661
Bostr.1460s0063 Boechera stricta Bostr.1460s0063 I 0.727
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.750
Bostr.7200s0005 Boechera stricta Bostr.7200s0005 I 0.689
Bra008740 Brassica rapa Bra008740 I 0.733
Bra023486 Brassica rapa Bra023486 I 0.709
Bra025311 Brassica rapa Bra025311 I 0.721
Bra025589 Brassica rapa Bra025589 I 0.689
Bra039065 Brassica rapa Bra039065 I 0.664
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I 0.689
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I 0.750
Cagra.4961s0006 Capsella grandiflora Cagra.4961s0006 I 0.686
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.750
Carubv10005698m.g Capsella rubella Carubv10005698m.g I 0.689
Carubv10018791m.g Capsella rubella Carubv10018791m.g I 0.686
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.835
cassava27350.m1 Manihot esculenta cassava27350.m1 I 0.721
Ciclev10017556m.g Citrus clementina Ciclev10017556m.g I 0.703
Ciclev10032713m.g Citrus clementina Ciclev10032713m.g I 0.713
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.809
Eucgr.B03324 Eucalyptus grandis Eucgr.B03324 N 0.727
Eucgr.I01791 Eucalyptus grandis Eucgr.I01791 I 0.679
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.805
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.788
evm.TU.supercontig_126.33 Carica papaya evm.TU.supercontig_126.33 I 0.669
gene32181-v1.0-hybrid Fragaria vesca gene32181-v1.0-hybrid I 0.769
GL1 Arabidopsis thaliana AT3G27920 I 0.686
GL1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5000559 I 0.686
GLYMA10G35061 Glycine max GLYMA10G35061 I 0.670
GLYMA20G32500 Glycine max GLYMA20G32500 I 0.678
Gorai.001G020600 Gossypium raimondii Gorai.001G020600 I 0.672
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.779
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I 0.727
LjT16O05.150.nd Lotus japonicus LjT16O05.150.nd I 0.709
MDP0000164048 Malus domestica MDP0000164048 I 0.703
MDP0000199965 Malus domestica MDP0000199965 I 0.668
MDP0000266683 Malus domestica MDP0000266683 I 0.739
MDP0000537324 Malus domestica MDP0000537324 I 0.711
MDP0000578193 Malus domestica MDP0000578193 I 0.806
MDP0000650225 Malus domestica MDP0000650225 I 0.825
MYB23 Arabidopsis thaliana AT5G40330 D 0.689
orange1.1g047269m.g Citrus sinensis orange1.1g047269m.g I 0.713
Pm006678 Prunus mume Pm006678 I 0.703
Pm024725 Prunus mume Pm024725 I 0.846
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.793
POPTR_0015s08700 Populus trichocarpa POPTR_0015s08700 I 0.721
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.800
PRUPE_ppa014884mg Prunus persica PRUPE_ppa014884mg I 0.703
SapurV1A.1178s0040 Salix purpurea SapurV1A.1178s0040 N 0.725
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.815
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.856
Solyc12g049300.1 Solanum lycopersicum Solyc12g049300.1 I 0.668
TCM_010360 Theobroma cacao TCM_010360 I 0.706
TCM_012057 Theobroma cacao TCM_012057 I 0.827
TCM_016886 Theobroma cacao TCM_016886 I 0.745
TCM_037377 Theobroma cacao TCM_037377 I 0.696
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.721
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.750
Thhalv10028340m.g Eutrema salsugineum Thhalv10028340m.g I 0.689
VIT_01s0127g00730 Vitis vinifera VIT_01s0127g00730 I 0.710
VIT_11s0016g01320 Vitis vinifera VIT_11s0016g01320 I 0.665
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I 0.720
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.824
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.750
WER Arabidopsis thaliana AT5G14750 D 0.750