snap_masked-pve_contig_1-abinit-gene-1.66 (Pythium vexans)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 snap_masked-pve_contig_1-abinit-gene-1.66 T279996_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
This gene encodes a 190 kD nuclear phosphoprotein that plays a role in maintaining genomic stability, and it also acts as a tumor suppressor. The BRCA1 gene contains 22 exons spanning about 110 kb of DNA. The encoded protein combines with other tumor suppressors, DNA damage sensors, and signal transducers to form a large multi-subunit protein complex known as the BRCA1-associated genome surveillance complex (BASC). This gene product associates with RNA polymerase II, and through the C-terminal domain, also interacts with histone deacetylase complexes. This protein thus plays a role in transcription, DNA repair of double-stranded breaks, and recombination. Mutations in this gene are responsible for approximately 40% of inherited breast cancers and more than 80% of inherited breast and ovarian cancers. Alternative splicing plays a role in modulating the subcellular localization and physiological function of this gene. Many alternatively spliced transcript variants, some of which are disease-associated mutations, have been described for this gene, but the full-length natures of only some of these variants has been described. A related pseudogene, which is also located on chromosome 17, has been identified. [provided by RefSeq, May 2020]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Phyra73031
M02332_2.00
Phytophthora ramorum
NDRKTCAGTN

NACTGAMYHN
PBM
Weirauch et al.(2014)
pTH7816
0.823 0.928
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EPrPV00000013139 Myb 15 61
EPrPV00000013139 Myb 67 112
EPrPV00000013139 Myb 118 162

Links

Other Myb/SANT family TFs
Other Pythium vexans TFs

Invalid Input OrderBy

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action