TCM_019009 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_019009 T280528_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HHO6
M07024_2.00 		Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC		 Dap-seq
OMalley et al.(2016)
AT1G49560_col_a 		0.727 0.809
HHO6
M07025_2.00 		Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH		 Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a 		0.727 0.809
EFM
M07044_2.00 		Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN		 Dap-seq
OMalley et al.(2016)
At2g03500_col_a 		0.688 0.787
EFM
M07045_2.00 		Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY		 Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a 		0.688 0.787
PK19779.1
M02354_2.00 		Cannabis sativa
NNKATNCNNN
NNNGNATMNN		 PBM
Weirauch et al.(2014)
pTH9610 		0.681 0.787
NIGT1
M02328_2.00 		Oryza sativa
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH8646 		0.681 0.766
HHO3
M02289_2.00 		Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN		 PBM
Weirauch et al.(2014)
pTH7278 		0.673 0.766
HHO2
M02290_2.00 		Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH7115 		0.673 0.766
HHO3
M07016_2.00 		Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN		 Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a 		0.673 0.766
HHO3
M07017_2.00 		Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND		 Dap-seq
OMalley et al.(2016)
At1g25550_col 		0.673 0.766
HHO2
M07029_2.00 		Arabidopsis thaliana
AKATTCY
RGAATMT		 Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a 		0.673 0.766
HHO2
M07030_2.00 		Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY		 Dap-seq
OMalley et al.(2016)
At1g68670_col 		0.673 0.766
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY03817 Myb 225 276

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra018794 Brassica rapa Bra018794 I 0.787
MDP0000204785 Malus domestica MDP0000204785 N 0.755
Eucgr.I01178 Eucalyptus grandis Eucgr.I01178 I 0.752
SapurV1A.0512s0010 Salix purpurea SapurV1A.0512s0010 I 0.748
SapurV1A.1984s0010 Salix purpurea SapurV1A.1984s0010 I 0.748
TCM_037970 Theobroma cacao TCM_037970 I 0.748
GRMZM2G171468 Zea mays GRMZM2G171468 I 0.745
Gorai.001G206600 Gossypium raimondii Gorai.001G206600 N 0.734
cassava2665.m1 Manihot esculenta cassava2665.m1 N 0.731
evm.TU.supercontig_62.51 Carica papaya evm.TU.supercontig_62.51 I 0.727
Eucgr.G01503 Eucalyptus grandis Eucgr.G01503 I 0.727
29780.m001324 Ricinus communis 29780.m001324 I 0.727
Eucgr.H01993 Eucalyptus grandis Eucgr.H01993 I 0.727
cassava11925.valid.m1 Manihot esculenta cassava11925.valid.m1 I 0.727
evm.TU.supercontig_6.397 Carica papaya evm.TU.supercontig_6.397 I 0.727
VIT_07s0197g00060 Vitis vinifera VIT_07s0197g00060 I 0.727
GLYMA11G06230 Glycine max GLYMA11G06230 I 0.727
GLYMA07G33130 Glycine max GLYMA07G33130 I 0.727
GLYMA17G20520 Glycine max GLYMA17G20520 I 0.727
Pm021479 Prunus mume Pm021479 I 0.727
Solyc01g108300.2 Solanum lycopersicum Solyc01g108300.2 I 0.727
gene24094-v1.0-hybrid Fragaria vesca gene24094-v1.0-hybrid I 0.727
Ciclev10028556m.g Citrus clementina Ciclev10028556m.g I 0.727
POPTR_0009s10980 Populus trichocarpa POPTR_0009s10980 I 0.727
Bostr.26675s0216 Boechera stricta Bostr.26675s0216 I 0.727
POPTR_0007s11470 Populus trichocarpa POPTR_0007s11470 I 0.727
Cla001846 Citrullus lanatus Cla001846 I 0.727
cassava29454.valid.m1 Manihot esculenta cassava29454.valid.m1 I 0.727
Cucsa.102260 Cucumis sativus Cucsa.102260 I 0.727
Cagra.3534s0002 Capsella grandiflora Cagra.3534s0002 I 0.727
Ca_06422 Cicer arietinum Ca_06422 I 0.727
cassava20352.m1 Manihot esculenta cassava20352.m1 I 0.727
MTR_4g086835 Medicago truncatula MTR_4g086835 I 0.727
Gorai.003G021300 Gossypium raimondii Gorai.003G021300 I 0.727
PRUPE_ppa006812mg Prunus persica PRUPE_ppa006812mg I 0.727
Carubv10009677m.g Capsella rubella Carubv10009677m.g I 0.727
cassava29869.valid.m1 Manihot esculenta cassava29869.valid.m1 I 0.727
gene31899-v1.0-hybrid Fragaria vesca gene31899-v1.0-hybrid I 0.727
Thhalv10011605m.g Eutrema salsugineum Thhalv10011605m.g I 0.727
orange1.1g015403m.g Citrus sinensis orange1.1g015403m.g I 0.727
HHO6 Arabidopsis thaliana AT1G49560 D 0.727
MDP0000200243 Malus domestica MDP0000200243 I 0.727
Gorai.008G026300 Gossypium raimondii Gorai.008G026300 I 0.727
TCM_006998 Theobroma cacao TCM_006998 I 0.727
SapurV1A.0090s0480 Salix purpurea SapurV1A.0090s0480 I 0.727
Bo6g018370 Brassica oleracea Bo6g018370 I 0.727
TCM_000558 Theobroma cacao TCM_000558 I 0.727
Lus10020995.g Linum usitatissimum Lus10020995.g I 0.727
PK04145.1 Cannabis sativa PK04145.1 I 0.727
fgenesh2_kg.1__4045__AT1G49560.1 Arabidopsis lyrata fgenesh2_kg.1__4045__AT1G49560.1 I 0.727
VIT_03s0063g01060 Vitis vinifera VIT_03s0063g01060 I 0.727
GLYMA01G39040 Glycine max GLYMA01G39040 I 0.727
GLYMA02G15320 Glycine max GLYMA02G15320 I 0.727
Gorai.013G040600 Gossypium raimondii Gorai.013G040600 I 0.727
Gorai.008G073300 Gossypium raimondii Gorai.008G073300 I 0.727
29790.m000831 Ricinus communis 29790.m000831 I 0.724
Cla016244 Citrullus lanatus Cla016244 I 0.721
29676.m001636 Ricinus communis 29676.m001636 I 0.721
Cucsa.220080 Cucumis sativus Cucsa.220080 I 0.721
GSMUA_Achr6G00650_001 Musa acuminata GSMUA_Achr6G00650_001 I 0.720
PGSC0003DMG400025801 Solanum tuberosum PGSC0003DMG400025801 I 0.719
Solyc02g090400.2 Solanum lycopersicum Solyc02g090400.2 I 0.719
chr2.LjT16G06.130.nd Lotus japonicus chr2.LjT16G06.130.nd I 0.719
PGSC0003DMG400010067 Solanum tuberosum PGSC0003DMG400010067 I 0.719
TCM_019003 Theobroma cacao TCM_019003 N 0.718
mgf011229m Mimulus guttatus mgf011229m I 0.713
mgf013442m Mimulus guttatus mgf013442m I 0.713
orange1.1g016585m.g Citrus sinensis orange1.1g016585m.g I 0.712
Ciclev10031793m.g Citrus clementina Ciclev10031793m.g I 0.712
Pavir.J16844 Panicum virgatum Pavir.J16844 I 0.710
evm.TU.supercontig_14.231 Carica papaya evm.TU.supercontig_14.231 N 0.700
Si036412m.g Setaria italica Si036412m.g I 0.696
Pavir.J18103 Panicum virgatum Pavir.J18103 I 0.696
Pavir.Ia00346 Panicum virgatum Pavir.Ia00346 I 0.696
Sb01g007130 Sorghum bicolor Sb01g007130 I 0.696
MTR_5g017980 Medicago truncatula MTR_5g017980 I 0.693
MDP0000504079 Malus domestica MDP0000504079 I 0.693
GSMUA_Achr10G08270_001 Musa acuminata GSMUA_Achr10G08270_001 I 0.693
Ca_02122 Cicer arietinum Ca_02122 I 0.693
Gorai.012G150500 Gossypium raimondii Gorai.012G150500 I 0.693
Lus10012056.g Linum usitatissimum Lus10012056.g I 0.693
Traes_5DS_13C2391DC Triticum aestivum Traes_5DS_13C2391DC I 0.688
VIT_11s0016g04600 Vitis vinifera VIT_11s0016g04600 I 0.688
Traes_5BS_C9EA93E10 Triticum aestivum Traes_5BS_C9EA93E10 I 0.688
Solyc12g006800.1 Solanum lycopersicum Solyc12g006800.1 I 0.688
Ca_06627 Cicer arietinum Ca_06627 I 0.688
AC234520.1_FG003 Zea mays AC234520.1_FG003 I 0.688
Cla012503 Citrullus lanatus Cla012503 I 0.688
Cla017007 Citrullus lanatus Cla017007 I 0.688
Eucgr.C04155 Eucalyptus grandis Eucgr.C04155 I 0.688
MDP0000128135 Malus domestica MDP0000128135 I 0.688
orange1.1g011048m.g Citrus sinensis orange1.1g011048m.g I 0.688
Lus10043304.g Linum usitatissimum Lus10043304.g I 0.688
Gorai.009G022100 Gossypium raimondii Gorai.009G022100 I 0.688
Gorai.001G002800 Gossypium raimondii Gorai.001G002800 I 0.688
Pavir.Ca02525 Panicum virgatum Pavir.Ca02525 I 0.688
Pavir.Eb00363 Panicum virgatum Pavir.Eb00363 I 0.688
Thhalv10004257m.g Eutrema salsugineum Thhalv10004257m.g I 0.688
PK20621.1 Cannabis sativa PK20621.1 I 0.688
SapurV1A.0246s0200 Salix purpurea SapurV1A.0246s0200 I 0.688
Pavir.J13382 Panicum virgatum Pavir.J13382 I 0.688
Pavir.J08752 Panicum virgatum Pavir.J08752 I 0.688
gene30953-v1.0-hybrid Fragaria vesca gene30953-v1.0-hybrid I 0.688
evm.TU.supercontig_127.55 Carica papaya evm.TU.supercontig_127.55 I 0.688
Cucsa.082250 Cucumis sativus Cucsa.082250 I 0.688
Cucsa.116140 Cucumis sativus Cucsa.116140 I 0.688
cassava24190.valid.m1 Manihot esculenta cassava24190.valid.m1 I 0.688
cassava11434.m1 Manihot esculenta cassava11434.m1 I 0.688
29807.m000474 Ricinus communis 29807.m000474 I 0.688
fgenesh1_pg.scaffold_166000054 Physcomitrella patens fgenesh1_pg.scaffold_166000054 I 0.688
Aquca_001_00694 Aquilegia coerulea Aquca_001_00694 I 0.688
Ciclev10008096m.g Citrus clementina Ciclev10008096m.g I 0.688
Carubv10017308m.g Capsella rubella Carubv10017308m.g I 0.688
Cagra.3545s0007 Capsella grandiflora Cagra.3545s0007 I 0.688
Bostr.0556s0172 Boechera stricta Bostr.0556s0172 I 0.688
Pm027466 Prunus mume Pm027466 I 0.688
TRAES3BF056900070CFD_g Triticum aestivum TRAES3BF056900070CFD_g I 0.688
MTR_4g113140 Medicago truncatula MTR_4g113140 I 0.688
OB01G14760 Oryza brachyantha OB01G14760 I 0.688
BGIOSGA002879 Oryza indica BGIOSGA002879 I 0.688
Si022287m.g Setaria italica Si022287m.g I 0.688
LPERR12G14470 Leersia perrieri LPERR12G14470 I 0.688
GSMUA_Achr6G34680_001 Musa acuminata GSMUA_Achr6G34680_001 I 0.688
LPERR01G04660 Leersia perrieri LPERR01G04660 I 0.688
OBART12G17240 Oryza barthii OBART12G17240 I 0.688
OGLUM01G05410 Oryza glumaepatula OGLUM01G05410 I 0.688
ONIVA12G16020 Oryza nivara ONIVA12G16020 I 0.688
OPUNC01G04800 Oryza punctata OPUNC01G04800 I 0.688
OPUNC12G15670 Oryza punctata OPUNC12G15670 I 0.688
ONIVA01G05610 Oryza nivara ONIVA01G05610 I 0.688
OMERI01G04960 Oryza meridionalis OMERI01G04960 I 0.688
OGLUM12G18880 Oryza glumaepatula OGLUM12G18880 I 0.688
OLONG_018015 Oryza longistaminata OLONG_018015 I 0.688
GSMUA_Achr6G05330_001 Musa acuminata GSMUA_Achr6G05330_001 I 0.688
GSMUA_Achr10G27180_001 Musa acuminata GSMUA_Achr10G27180_001 I 0.688
Bra025115 Brassica rapa Bra025115 I 0.688
Bra026548 Brassica rapa Bra026548 I 0.688
BRADI2G04810 Brachypodium distachyon BRADI2G04810 I 0.688
Bo7g081380 Brassica oleracea Bo7g081380 I 0.688
EFM Arabidopsis thaliana AT2G03500 D 0.688
BGIOSGA037689 Oryza indica BGIOSGA037689 I 0.688
Bo2g137000 Brassica oleracea Bo2g137000 I 0.688
BRADI4G03160 Brachypodium distachyon BRADI4G03160 I 0.688
F775_03006 Aegilops tauschii F775_03006 I 0.688
GLYMA07G29490 Glycine max GLYMA07G29490 I 0.688
GLYMA17G12720 Glycine max GLYMA17G12720 I 0.688
GRMZM2G348238 Zea mays GRMZM2G348238 I 0.688
GLYMA06G23902 Glycine max GLYMA06G23902 I 0.688
GLYMA05G08150 Glycine max GLYMA05G08150 I 0.688
F775_15336 Aegilops tauschii F775_15336 I 0.688
GLYMA04G21680 Glycine max GLYMA04G21680 I 0.688
ORGLA01G0045900 Oryza glaberrima ORGLA01G0045900 I 0.688
AMTR_s00122p00127250 Amborella trichopoda AMTR_s00122p00127250 I 0.688
Sb08g019720 Sorghum bicolor Sb08g019720 I 0.688
scaffold_500333.1 Arabidopsis lyrata scaffold_500333.1 I 0.688
SELMODRAFT_402040 Selaginella moellendorffii SELMODRAFT_402040 I 0.688
PGSC0003DMG400030389 Solanum tuberosum PGSC0003DMG400030389 I 0.688
Sb03g004090 Sorghum bicolor Sb03g004090 I 0.688
POPTR_0018s06410 Populus trichocarpa POPTR_0018s06410 I 0.688
POPTR_0006s16000 Populus trichocarpa POPTR_0006s16000 I 0.688
PRUPE_ppa016044mg Prunus persica PRUPE_ppa016044mg I 0.688
SELMODRAFT_423260 Selaginella moellendorffii SELMODRAFT_423260 I 0.688
OS12G0586300 Oryza sativa OS12G0586300 I 0.688
AMTR_s00033p00241280 Amborella trichopoda AMTR_s00033p00241280 I 0.688
ORUFI01G05240 Oryza rufipogon ORUFI01G05240 I 0.688
ORGLA12G0148200 Oryza glaberrima ORGLA12G0148200 I 0.688
Si001230m.g Setaria italica Si001230m.g I 0.688
ORUFI12G19230 Oryza rufipogon ORUFI12G19230 I 0.688
OS01G0176700 Oryza sativa OS01G0176700 I 0.688
Gorai.010G067300 Gossypium raimondii Gorai.010G067300 I 0.686
Cucsa.110080 Cucumis sativus Cucsa.110080 I 0.686
SapurV1A.0641s0120 Salix purpurea SapurV1A.0641s0120 I 0.684
PRUPE_ppa006879mg Prunus persica PRUPE_ppa006879mg I 0.684
TCM_011857 Theobroma cacao TCM_011857 I 0.681
Pavir.Aa02952 Panicum virgatum Pavir.Aa02952 I 0.681
PRUPE_ppa007222mg Prunus persica PRUPE_ppa007222mg I 0.681
GRMZM2G159119 Zea mays GRMZM2G159119 I 0.681
cassava11986.valid.m1 Manihot esculenta cassava11986.valid.m1 I 0.681
Solyc05g009720.2 Solanum lycopersicum Solyc05g009720.2 I 0.681
Pavir.Ab00626 Panicum virgatum Pavir.Ab00626 I 0.681
GRMZM2G016370 Zea mays GRMZM2G016370 I 0.681
GLYMA20G01260 Glycine max GLYMA20G01260 I 0.681
Gorai.008G185500 Gossypium raimondii Gorai.008G185500 I 0.681
BRADI3G10730 Brachypodium distachyon BRADI3G10730 I 0.681
GSMUA_Achr11G13410_001 Musa acuminata GSMUA_Achr11G13410_001 I 0.681
MDP0000202657 Malus domestica MDP0000202657 I 0.681
MDP0000703817 Malus domestica MDP0000703817 I 0.681
Traes_2BS_10A8CAB27 Triticum aestivum Traes_2BS_10A8CAB27 I 0.681
SELMODRAFT_66160 Selaginella moellendorffii SELMODRAFT_66160 I 0.681
SapurV1A.1001s0050 Salix purpurea SapurV1A.1001s0050 I 0.681
Sb08g003180 Sorghum bicolor Sb08g003180 I 0.681
F775_13221 Aegilops tauschii F775_13221 I 0.681
VIT_01s0011g03110 Vitis vinifera VIT_01s0011g03110 I 0.681
GSMUA_Achr10G28540_001 Musa acuminata GSMUA_Achr10G28540_001 I 0.681
POPTR_0008s11630 Populus trichocarpa POPTR_0008s11630 I 0.681
OMERI02G14870 Oryza meridionalis OMERI02G14870 I 0.681
ONIVA02G15910 Oryza nivara ONIVA02G15910 I 0.681
ORUFI02G14900 Oryza rufipogon ORUFI02G14900 I 0.681
OBART02G14690 Oryza barthii OBART02G14690 I 0.681
AMTR_s00093p00110710 Amborella trichopoda AMTR_s00093p00110710 I 0.681
Aquca_026_00236 Aquilegia coerulea Aquca_026_00236 I 0.681
NIGT1 Oryza sativa OS02G0325600 D 0.681
Cucsa.365440 Cucumis sativus Cucsa.365440 I 0.681
28883.m000751 Ricinus communis 28883.m000751 I 0.681
Pm029019 Prunus mume Pm029019 I 0.681
OGLUM02G14610 Oryza glumaepatula OGLUM02G14610 I 0.681
OB02G22950 Oryza brachyantha OB02G22950 I 0.681
PGSC0003DMG400000828 Solanum tuberosum PGSC0003DMG400000828 I 0.681
Cla008104 Citrullus lanatus Cla008104 I 0.681
LPERR02G11880 Leersia perrieri LPERR02G11880 I 0.681
GSMUA_Achr8G18270_001 Musa acuminata GSMUA_Achr8G18270_001 I 0.681
ORGLA02G0127400 Oryza glaberrima ORGLA02G0127400 I 0.681
evm.TU.supercontig_1.213 Carica papaya evm.TU.supercontig_1.213 I 0.681
OPUNC02G13150 Oryza punctata OPUNC02G13150 I 0.681
MLOC_72007 Hordeum vulgare MLOC_72007 I 0.681
PK19779.1 Cannabis sativa PK19779.1 D 0.681
Bra012471 Brassica rapa Bra012471 I 0.679
mgf007637m Mimulus guttatus mgf007637m I 0.679
Lus10034280.g Linum usitatissimum Lus10034280.g I 0.679
Bo7g052870 Brassica oleracea Bo7g052870 I 0.679
SapurV1A.1020s0030 Salix purpurea SapurV1A.1020s0030 I 0.678
LjSGA_025851.1 Lotus japonicus LjSGA_025851.1 I 0.678
BRADI1G58830 Brachypodium distachyon BRADI1G58830 I 0.678
Pm026452 Prunus mume Pm026452 I 0.678
POPTR_0004s15220 Populus trichocarpa POPTR_0004s15220 I 0.678
POPTR_0005s14120 Populus trichocarpa POPTR_0005s14120 I 0.678
SapurV1A.0428s0080 Salix purpurea SapurV1A.0428s0080 I 0.678
Bra040662 Brassica rapa Bra040662 I 0.678
Gorai.007G053100 Gossypium raimondii Gorai.007G053100 I 0.675
Lus10035043.g Linum usitatissimum Lus10035043.g I 0.674
Lus10041485.g Linum usitatissimum Lus10041485.g I 0.674
gene04220-v1.0-hybrid Fragaria vesca gene04220-v1.0-hybrid I 0.674
Lus10021699.g Linum usitatissimum Lus10021699.g I 0.674
HHO2 Arabidopsis thaliana AT1G68670 D 0.673
Thhalv10008115m.g Eutrema salsugineum Thhalv10008115m.g I 0.673
Thhalv10018737m.g Eutrema salsugineum Thhalv10018737m.g I 0.673
HHO3 Arabidopsis thaliana AT1G25550 D 0.673
Carubv10020552m.g Capsella rubella Carubv10020552m.g I 0.673
Cagra.3392s0001 Capsella grandiflora Cagra.3392s0001 I 0.673
Cagra.0613s0015 Capsella grandiflora Cagra.0613s0015 I 0.673
Bostr.26959s0022 Boechera stricta Bostr.26959s0022 I 0.673
Bostr.12659s0399 Boechera stricta Bostr.12659s0399 I 0.673
Bo2g061130 Brassica oleracea Bo2g061130 I 0.673
Carubv10009492m.g Capsella rubella Carubv10009492m.g I 0.673
Bo6g107160 Brassica oleracea Bo6g107160 I 0.673
Al_scaffold_0001_2706 Arabidopsis lyrata Al_scaffold_0001_2706 I 0.673
Bra004330 Brassica rapa Bra004330 I 0.673
Bra038360 Brassica rapa Bra038360 I 0.673
fgenesh2_kg.2__1124__AT1G68670.1 Arabidopsis lyrata fgenesh2_kg.2__1124__AT1G68670.1 I 0.673
Pm015406 Prunus mume Pm015406 N 0.672
Si019945m.g Setaria italica Si019945m.g I 0.668
MTR_1g093080 Medicago truncatula MTR_1g093080 I 0.665
mgf010394m Mimulus guttatus mgf010394m I 0.663