fgenesh1_pg.scaffold_2000161 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pg.scaffold_2000161 T284899_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.663 0.660
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_2000161 Myb 62 113

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.scaffold_226000065 Physcomitrella patens fgenesh1_pg.scaffold_226000065 I 0.804
estExt_fgenesh2_pg.C_1110034 Physcomitrella patens estExt_fgenesh2_pg.C_1110034 I 0.744
estExt_fgenesh2_pg.C_1370060 Physcomitrella patens estExt_fgenesh2_pg.C_1370060 I 0.676
fgenesh1_pg.scaffold_32000038 Physcomitrella patens fgenesh1_pg.scaffold_32000038 I 0.675
VIT_06s0004g07000 Vitis vinifera VIT_06s0004g07000 I 0.673
evm.TU.supercontig_19.148 Carica papaya evm.TU.supercontig_19.148 I 0.663
Ciclev10029989m.g Citrus clementina Ciclev10029989m.g I 0.663
Gorai.009G112300 Gossypium raimondii Gorai.009G112300 I 0.663
PK26523.1 Cannabis sativa PK26523.1 D 0.663
SapurV1A.0905s0010 Salix purpurea SapurV1A.0905s0010 I 0.663
SapurV1A.0650s0140 Salix purpurea SapurV1A.0650s0140 I 0.663
orange1.1g041956m.g Citrus sinensis orange1.1g041956m.g I 0.663
MDP0000617021 Malus domestica MDP0000617021 I 0.663
cassava41268.m1 Manihot esculenta cassava41268.m1 I 0.663
PRUPE_ppa025397mg Prunus persica PRUPE_ppa025397mg I 0.663
POPTR_0016s12940 Populus trichocarpa POPTR_0016s12940 I 0.663
POPTR_0010s19310 Populus trichocarpa POPTR_0010s19310 I 0.663
OB12G10410 Oryza brachyantha OB12G10410 I 0.663
TCM_042189 Theobroma cacao TCM_042189 I 0.663
TCM_042463 Theobroma cacao TCM_042463 I 0.663
cassava33845.m1 Manihot esculenta cassava33845.m1 I 0.663
cassava21831.m1 Manihot esculenta cassava21831.m1 I 0.663
27757.m000022 Ricinus communis 27757.m000022 I 0.663
Pm018961 Prunus mume Pm018961 I 0.663
AMTR_s00021p00013790 Amborella trichopoda AMTR_s00021p00013790 I 0.663