fgenesh1_pg.scaffold_420000003 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pg.scaffold_420000003 T284911_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH

DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.670 0.699
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH

DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.670 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_420000003 Myb 14 61
fgenesh1_pg.scaffold_420000003 Myb 67 112

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
DACRYDRAFT_114955 Dacryopinax sp DACRYDRAFT_114955 I 0.000
EDP43056.1 Malassezia globosa EDP43056.1 N 0.000
E5Q_02301 Mixia osmundae E5Q_02301 I 0.000
gw1.9.461.1 Mucor circinelloides gw1.9.461.1 I 0.000
e_gw1.8.572.1 Mucor circinelloides e_gw1.8.572.1 I 0.000
estExt_fgeneshPB_pg.C_280113 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_280113 I 0.000
estExt_fgeneshPB_pg.C_260036 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_260036 I 0.000
PaG_05044 Pseudozyma aphidis PaG_05044 N 0.000
PSEUBRA_SCAF3g03871 Pseudozyma brasiliensis PSEUBRA_SCAF3g03871 N 0.000
PHSY_004818 Pseudozyma hubeiensis PHSY_004818 N 0.000
RO3G_13161 Rhizopus oryzae RO3G_13161 I 0.000
RO3G_09342 Rhizopus oryzae RO3G_09342 I 0.000
RO3G_04419 Rhizopus oryzae RO3G_04419 I 0.000
sr12343 Sporisorium reilianum sr12343 N 0.000
K437DRAFT_226413 Tilletiaria anomala K437DRAFT_226413 N 0.000
UHOR_01570 Ustilago hordei UHOR_01570 N 0.000
UM01042 Ustilago maydis UM01042 N 0.000