CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10019103m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10019103m.g
T286385_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW
WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.731
0.785
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH
DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.731
0.785
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH
DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.713
0.742
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD
HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.713
0.742
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10019103m
Myb
64
110
RGHWRISEDTQLMELVAVYGPQNWNHIAENMQGRTGKSCRLRWFNQL
Carubv10019103m
Myb
116
161
KRAFAVEEEERLLAAHRAFGNKWAMIAKLFNGRTDNALKNHWHVLM
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
255 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.1475s0003
Capsella grandiflora
Cagra.1475s0003
I
0.909
MYB110
Arabidopsis lyrata
scaffold_500894.1
I
0.883
MYB110
Arabidopsis thaliana
AT3G29020
I
0.883
Bostr.0556s0551
Boechera stricta
Bostr.0556s0551
I
0.883
Bra039036
Brassica rapa
Bra039036
I
0.862
Thhalv10004648m.g
Eutrema salsugineum
Thhalv10004648m.g
I
0.857
Bo9g008750
Brassica oleracea
Bo9g008750
I
0.846
TCM_033560
Theobroma cacao
TCM_033560
I
0.752
Gorai.006G015200
Gossypium raimondii
Gorai.006G015200
I
0.750
Pavir.Ea01097
Panicum virgatum
Pavir.Ea01097
I
0.738
Thhalv10028155m.g
Eutrema salsugineum
Thhalv10028155m.g
I
0.738
Eucgr.K01542
Eucalyptus grandis
Eucgr.K01542
I
0.736
MYB105
Arabidopsis thaliana
AT1G69560
D
0.731
MYB105
Arabidopsis lyrata
fgenesh2_kg.2__1220__AT1G69560.1
I
0.731
Cla000326
Citrullus lanatus
Cla000326
I
0.730
GRMZM2G312419
Zea mays
GRMZM2G312419
I
0.729
Sb03g010960
Sorghum bicolor
Sb03g010960
I
0.729
GRMZM2G111731
Zea mays
GRMZM2G111731
I
0.729
Pavir.J21755
Panicum virgatum
Pavir.J21755
I
0.728
cassava12378.valid.m1
Manihot esculenta
cassava12378.valid.m1
I
0.726
OGLUM01G12520
Oryza glumaepatula
OGLUM01G12520
I
0.726
POPTR_0008s08760
Populus trichocarpa
POPTR_0008s08760
I
0.726
ORUFI01G12050
Oryza rufipogon
ORUFI01G12050
I
0.726
OPUNC01G10870
Oryza punctata
OPUNC01G10870
I
0.726
ONIVA01G13400
Oryza nivara
ONIVA01G13400
I
0.726
OS01G0274800
Oryza sativa
OS01G0274800
I
0.726
OMERI01G10960
Oryza meridionalis
OMERI01G10960
I
0.726
Carubv10021327m.g
Capsella rubella
Carubv10021327m.g
I
0.725
Cagra.0820s0004
Capsella grandiflora
Cagra.0820s0004
I
0.725
Bra004394
Brassica rapa
Bra004394
I
0.722
Bostr.10273s0409
Boechera stricta
Bostr.10273s0409
I
0.722
LPERR01G10360
Leersia perrieri
LPERR01G10360
I
0.722
Pavir.J16832
Panicum virgatum
Pavir.J16832
I
0.720
Si004691m.g
Setaria italica
Si004691m.g
I
0.719
Si005038m.g
Setaria italica
Si005038m.g
I
0.719
Bostr.26527s0427
Boechera stricta
Bostr.26527s0427
I
0.718
AtMYB56
Arabidopsis lyrata
fgenesh2_kg.6__1780__AT5G17800.1
I
0.718
Thhalv10014113m.g
Eutrema salsugineum
Thhalv10014113m.g
I
0.718
TRAES3BF063000030CFD_g
Triticum aestivum
TRAES3BF063000030CFD_g
I
0.717
MLOC_71066
Hordeum vulgare
MLOC_71066
I
0.717
Pavir.Hb01200
Panicum virgatum
Pavir.Hb01200
I
0.716
GSMUA_Achr6G32250_001
Musa acuminata
GSMUA_Achr6G32250_001
I
0.715
Cucsa.337000
Cucumis sativus
Cucsa.337000
I
0.713
MYB56
Arabidopsis thaliana
AT5G17800
D
0.713
Cla017770
Citrullus lanatus
Cla017770
I
0.713
Sb05g009460
Sorghum bicolor
Sb05g009460
I
0.712
cassava3020.m1
Manihot esculenta
cassava3020.m1
I
0.711
Sb03g010970
Sorghum bicolor
Sb03g010970
I
0.709
28838.m000246
Ricinus communis
28838.m000246
I
0.707
Bra023637
Brassica rapa
Bra023637
I
0.706
MDP0000878006
Malus domestica
MDP0000878006
I
0.706
MDP0000172476
Malus domestica
MDP0000172476
I
0.706
PDK_20s1366461g001
Phoenix dactylifera
PDK_20s1366461g001
I
0.705
POPTR_0013s06320
Populus trichocarpa
POPTR_0013s06320
I
0.704
SapurV1A.3733s0010
Salix purpurea
SapurV1A.3733s0010
I
0.704
SapurV1A.1664s0020
Salix purpurea
SapurV1A.1664s0020
I
0.704
Ciclev10020631m.g
Citrus clementina
Ciclev10020631m.g
I
0.704
PK28773.1
Cannabis sativa
PK28773.1
I
0.704
cassava25953.m1
Manihot esculenta
cassava25953.m1
I
0.704
orange1.1g047550m.g
Citrus sinensis
orange1.1g047550m.g
I
0.703
Ciclev10011967m.g
Citrus clementina
Ciclev10011967m.g
I
0.703
Bo6g109070
Brassica oleracea
Bo6g109070
I
0.703
Gorai.013G086400
Gossypium raimondii
Gorai.013G086400
I
0.701
TCM_011689
Theobroma cacao
TCM_011689
I
0.701
29813.m001506
Ricinus communis
29813.m001506
I
0.701
Cla010359
Citrullus lanatus
Cla010359
I
0.701
Gorai.005G142000
Gossypium raimondii
Gorai.005G142000
I
0.701
Eucgr.G02492
Eucalyptus grandis
Eucgr.G02492
I
0.701
Ciclev10031944m.g
Citrus clementina
Ciclev10031944m.g
I
0.701
orange1.1g046309m.g
Citrus sinensis
orange1.1g046309m.g
I
0.701
cassava12017.valid.m1
Manihot esculenta
cassava12017.valid.m1
I
0.701
Cucsa.284980
Cucumis sativus
Cucsa.284980
I
0.701
VIT_01s0026g02600
Vitis vinifera
VIT_01s0026g02600
I
0.701
cassava17309.m1
Manihot esculenta
cassava17309.m1
I
0.701
Cucsa.016540
Cucumis sativus
Cucsa.016540
I
0.700
Pavir.J31094
Panicum virgatum
Pavir.J31094
I
0.700
AMTR_s00186p00015620
Amborella trichopoda
AMTR_s00186p00015620
I
0.700
SELMODRAFT_6100
Selaginella moellendorffii
SELMODRAFT_6100
I
0.700
SELMODRAFT_6091
Selaginella moellendorffii
SELMODRAFT_6091
I
0.700
POPTR_0019s05740
Populus trichocarpa
POPTR_0019s05740
I
0.699
BGIOSGA001907
Oryza indica
BGIOSGA001907
I
0.699
Eucgr.A02150
Eucalyptus grandis
Eucgr.A02150
I
0.698
cassava45348.m1
Manihot esculenta
cassava45348.m1
I
0.698
Bo9g159830
Brassica oleracea
Bo9g159830
I
0.697
Pavir.Cb01957
Panicum virgatum
Pavir.Cb01957
I
0.697
PGSC0003DMG400024822
Solanum tuberosum
PGSC0003DMG400024822
I
0.695
Pm025457
Prunus mume
Pm025457
I
0.695
SapurV1A.1416s0010
Salix purpurea
SapurV1A.1416s0010
I
0.695
SapurV1A.1660s0020
Salix purpurea
SapurV1A.1660s0020
I
0.695
GSMUA_Achr10G12830_001
Musa acuminata
GSMUA_Achr10G12830_001
I
0.695
PRUPE_ppa006434mg
Prunus persica
PRUPE_ppa006434mg
I
0.695
GSMUA_Achr3G09490_001
Musa acuminata
GSMUA_Achr3G09490_001
I
0.695
GSMUA_Achr6G15900_001
Musa acuminata
GSMUA_Achr6G15900_001
I
0.695
Gorai.007G346400
Gossypium raimondii
Gorai.007G346400
I
0.695
AMTR_s00119p00105590
Amborella trichopoda
AMTR_s00119p00105590
I
0.695
MDP0000755899
Malus domestica
MDP0000755899
I
0.695
evm.TU.supercontig_73.4
Carica papaya
evm.TU.supercontig_73.4
I
0.695
gene29254-v1.0-hybrid
Fragaria vesca
gene29254-v1.0-hybrid
I
0.695
GSMUA_Achr9G04990_001
Musa acuminata
GSMUA_Achr9G04990_001
I
0.695
GSMUA_Achr9G17000_001
Musa acuminata
GSMUA_Achr9G17000_001
I
0.693
mgf021546m
Mimulus guttatus
mgf021546m
I
0.693
Bo8g076540
Brassica oleracea
Bo8g076540
I
0.692
GLYMA01G05980
Glycine max
GLYMA01G05980
I
0.692
Ca_16374
Cicer arietinum
Ca_16374
I
0.692
Bostr.12659s0321
Boechera stricta
Bostr.12659s0321
I
0.692
MYB117
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1002287
I
0.692
AMTR_s00010p00264600
Amborella trichopoda
AMTR_s00010p00264600
I
0.692
MYB117
Arabidopsis thaliana
AT1G26780
I
0.692
Solyc05g007870.1
Solanum lycopersicum
Solyc05g007870.1
I
0.692
GLYMA07G35581
Glycine max
GLYMA07G35581
I
0.692
MTR_4g082040
Medicago truncatula
MTR_4g082040
I
0.692
MTR_5g041570
Medicago truncatula
MTR_5g041570
I
0.692
mgf001214m
Mimulus guttatus
mgf001214m
I
0.692
Bra016285
Brassica rapa
Bra016285
I
0.692
GLYMA02G12105
Glycine max
GLYMA02G12105
I
0.692
MDP0000146675
Malus domestica
MDP0000146675
I
0.692
evm.TU.supercontig_1.43
Carica papaya
evm.TU.supercontig_1.43
I
0.692
SapurV1A.0438s0100
Salix purpurea
SapurV1A.0438s0100
I
0.692
Carubv10011887m.g
Capsella rubella
Carubv10011887m.g
I
0.692
PGSC0003DMG400018427
Solanum tuberosum
PGSC0003DMG400018427
I
0.692
SapurV1A.0149s0020
Salix purpurea
SapurV1A.0149s0020
I
0.692
PK20989.1
Cannabis sativa
PK20989.1
I
0.692
VIT_14s0108g01010
Vitis vinifera
VIT_14s0108g01010
I
0.692
Bo5g045110
Brassica oleracea
Bo5g045110
I
0.692
chr2.CM0641.440.nd
Lotus japonicus
chr2.CM0641.440.nd
I
0.692
MDP0000136541
Malus domestica
MDP0000136541
I
0.692
Thhalv10019759m.g
Eutrema salsugineum
Thhalv10019759m.g
I
0.692
Lus10030452.g
Linum usitatissimum
Lus10030452.g
I
0.692
Cagra.1150s0023
Capsella grandiflora
Cagra.1150s0023
I
0.692
Thhalv10008049m.g
Eutrema salsugineum
Thhalv10008049m.g
I
0.692
Lus10026611.g
Linum usitatissimum
Lus10026611.g
I
0.692
GLYMA20G04511
Glycine max
GLYMA20G04511
I
0.692
Bo3g012780
Brassica oleracea
Bo3g012780
I
0.691
GSMUA_Achr10G05080_001
Musa acuminata
GSMUA_Achr10G05080_001
I
0.691
Bra006422
Brassica rapa
Bra006422
I
0.691
Pavir.J04678
Panicum virgatum
Pavir.J04678
I
0.691
MTR_7g086960
Medicago truncatula
MTR_7g086960
I
0.691
gw1.200.30.1
Physcomitrella patens
gw1.200.30.1
I
0.691
Si026751m.g
Setaria italica
Si026751m.g
I
0.691
Solyc10g081320.1
Solanum lycopersicum
Solyc10g081320.1
I
0.689
PGSC0003DMG400028119
Solanum tuberosum
PGSC0003DMG400028119
I
0.689
gw1.2.29.1
Physcomitrella patens
gw1.2.29.1
I
0.689
GLYMA03G00980
Glycine max
GLYMA03G00980
I
0.689
BRADI3G36740
Brachypodium distachyon
BRADI3G36740
I
0.688
GRMZM2G428555
Zea mays
GRMZM2G428555
I
0.688
Pavir.Fb01599
Panicum virgatum
Pavir.Fb01599
I
0.688
Carubv10001376m.g
Capsella rubella
Carubv10001376m.g
I
0.688
Cagra.6254s0026
Capsella grandiflora
Cagra.6254s0026
I
0.688
OB08G23250
Oryza brachyantha
OB08G23250
I
0.688
Pavir.Fa00885
Panicum virgatum
Pavir.Fa00885
I
0.688
Sb07g021280
Sorghum bicolor
Sb07g021280
I
0.688
LPERR08G13020
Leersia perrieri
LPERR08G13020
I
0.688
Si011791m.g
Setaria italica
Si011791m.g
I
0.687
GSMUA_Achr3G16490_001
Musa acuminata
GSMUA_Achr3G16490_001
I
0.687
mgf006675m
Mimulus guttatus
mgf006675m
I
0.686
GLYMA19G29670
Glycine max
GLYMA19G29670
I
0.686
Bra003995
Brassica rapa
Bra003995
I
0.683
OGLUM08G16550
Oryza glumaepatula
OGLUM08G16550
I
0.683
ORUFI08G17710
Oryza rufipogon
ORUFI08G17710
I
0.683
OS08G0435700
Oryza sativa
OS08G0435700
I
0.683
ORGLA08G0138700
Oryza glaberrima
ORGLA08G0138700
I
0.683
ONIVA08G17040
Oryza nivara
ONIVA08G17040
I
0.683
PRUPE_ppa025260mg
Prunus persica
PRUPE_ppa025260mg
I
0.683
OBART08G15790
Oryza barthii
OBART08G15790
I
0.683
OMERI08G13100
Oryza meridionalis
OMERI08G13100
I
0.683
BGIOSGA028724
Oryza indica
BGIOSGA028724
I
0.683
Pm006483
Prunus mume
Pm006483
I
0.683
OPUNC08G13850
Oryza punctata
OPUNC08G13850
I
0.683
Cucsa.189540
Cucumis sativus
Cucsa.189540
I
0.682
GRMZM5G803355
Zea mays
GRMZM5G803355
I
0.682
GSMUA_Achr9G08480_001
Musa acuminata
GSMUA_Achr9G08480_001
I
0.682
Aquca_002_00639
Aquilegia coerulea
Aquca_002_00639
I
0.682
e_gw1.39.24.1
Physcomitrella patens
e_gw1.39.24.1
I
0.682
SapurV1A.0458s0070
Salix purpurea
SapurV1A.0458s0070
I
0.681
TRIUR3_29043
Triticum urartu
TRIUR3_29043
I
0.681
Ciclev10023285m.g
Citrus clementina
Ciclev10023285m.g
I
0.681
Bo2g013970
Brassica oleracea
Bo2g013970
I
0.681
MLOC_3926
Hordeum vulgare
MLOC_3926
I
0.681
TRAES3BF142600060CFD_g
Triticum aestivum
TRAES3BF142600060CFD_g
I
0.681
mgf018311m
Mimulus guttatus
mgf018311m
I
0.681
e_gw1.219.38.1
Physcomitrella patens
e_gw1.219.38.1
I
0.680
Ca_08179
Cicer arietinum
Ca_08179
I
0.680
POPTR_0010s17470
Populus trichocarpa
POPTR_0010s17470
I
0.680
e_gw1.91.11.1
Physcomitrella patens
e_gw1.91.11.1
I
0.680
GRMZM2G083239
Zea mays
GRMZM2G083239
I
0.680
SELMODRAFT_6282
Selaginella moellendorffii
SELMODRAFT_6282
I
0.680
SELMODRAFT_6284
Selaginella moellendorffii
SELMODRAFT_6284
I
0.680
GSMUA_Achr5G27750_001
Musa acuminata
GSMUA_Achr5G27750_001
I
0.679
MDP0000181178
Malus domestica
MDP0000181178
I
0.678
MDP0000232291
Malus domestica
MDP0000232291
I
0.678
PK01212.1
Cannabis sativa
PK01212.1
I
0.677
SELMODRAFT_8484
Selaginella moellendorffii
SELMODRAFT_8484
I
0.677
SELMODRAFT_38644
Selaginella moellendorffii
SELMODRAFT_38644
I
0.677
Aquca_022_00293
Aquilegia coerulea
Aquca_022_00293
I
0.676
gw1.74.13.1
Physcomitrella patens
gw1.74.13.1
I
0.676
Bra002107
Brassica rapa
Bra002107
I
0.675
Bo6g095400
Brassica oleracea
Bo6g095400
I
0.674
PDK_20s1403571g003
Phoenix dactylifera
PDK_20s1403571g003
I
0.674
cassava5849.m1
Manihot esculenta
cassava5849.m1
I
0.674
30137.m000436
Ricinus communis
30137.m000436
I
0.674
Lus10005683.g
Linum usitatissimum
Lus10005683.g
I
0.672
OMERI11G05160
Oryza meridionalis
OMERI11G05160
I
0.671
OGLUM11G05960
Oryza glumaepatula
OGLUM11G05960
I
0.671
LPERR11G05690
Leersia perrieri
LPERR11G05690
I
0.671
BRADI4G22730
Brachypodium distachyon
BRADI4G22730
I
0.671
MLOC_13062
Hordeum vulgare
MLOC_13062
I
0.671
BGIOSGA034994
Oryza indica
BGIOSGA034994
I
0.671
OPUNC11G06210
Oryza punctata
OPUNC11G06210
I
0.671
SELMODRAFT_80553
Selaginella moellendorffii
SELMODRAFT_80553
I
0.671
Solyc04g064540.2
Solanum lycopersicum
Solyc04g064540.2
I
0.671
ORGLA11G0056700
Oryza glaberrima
ORGLA11G0056700
I
0.671
SELMODRAFT_127613
Selaginella moellendorffii
SELMODRAFT_127613
I
0.671
ORUFI11G06340
Oryza rufipogon
ORUFI11G06340
I
0.671
OS11G0207600
Oryza sativa
OS11G0207600
I
0.671
Traes_4AL_7A841CAD2
Triticum aestivum
Traes_4AL_7A841CAD2
I
0.671
gw1.76.8.1
Physcomitrella patens
gw1.76.8.1
I
0.671
TRIUR3_35269
Triticum urartu
TRIUR3_35269
I
0.671
Traes_4BS_189002AB8
Triticum aestivum
Traes_4BS_189002AB8
I
0.671
ONIVA11G06220
Oryza nivara
ONIVA11G06220
I
0.671
Traes_4DS_F6E1A4F88
Triticum aestivum
Traes_4DS_F6E1A4F88
I
0.671
LPERR03G26860
Leersia perrieri
LPERR03G26860
I
0.669
Gorai.013G196500
Gossypium raimondii
Gorai.013G196500
I
0.669
POPTR_0007s04140
Populus trichocarpa
POPTR_0007s04140
I
0.669
OS03G0720800
Oryza sativa
OS03G0720800
I
0.669
BGIOSGA013472
Oryza indica
BGIOSGA013472
I
0.669
BGIOSGA013471
Oryza indica
BGIOSGA013471
I
0.669
SapurV1A.0171s0440
Salix purpurea
SapurV1A.0171s0440
I
0.669
GSMUA_Achr6G17630_001
Musa acuminata
GSMUA_Achr6G17630_001
I
0.669
OLONG_009506
Oryza longistaminata
OLONG_009506
I
0.669
ORUFI03G33630
Oryza rufipogon
ORUFI03G33630
I
0.669
ORGLA03G0409400
Oryza glaberrima
ORGLA03G0409400
I
0.669
OMERI03G28940
Oryza meridionalis
OMERI03G28940
I
0.669
OPUNC03G29370
Oryza punctata
OPUNC03G29370
I
0.669
ONIVA03G33740
Oryza nivara
ONIVA03G33740
I
0.669
OB03G39280
Oryza brachyantha
OB03G39280
I
0.669
OBART03G32240
Oryza barthii
OBART03G32240
I
0.669
OGLUM02G34940
Oryza glumaepatula
OGLUM02G34940
I
0.669
SapurV1A.2371s0030
Salix purpurea
SapurV1A.2371s0030
I
0.666
POPTR_0007s01430
Populus trichocarpa
POPTR_0007s01430
I
0.666
SapurV1A.0118s0380
Salix purpurea
SapurV1A.0118s0380
I
0.666
POPTR_0005s06410
Populus trichocarpa
POPTR_0005s06410
I
0.666
evm.TU.supercontig_480.4
Carica papaya
evm.TU.supercontig_480.4
I
0.664
PK17670.1
Cannabis sativa
PK17670.1
I
0.663
GSMUA_Achr9G29090_001
Musa acuminata
GSMUA_Achr9G29090_001
I
0.663
AMTR_s00024p00137930
Amborella trichopoda
AMTR_s00024p00137930
I
0.663
30000.m000380
Ricinus communis
30000.m000380
I
0.663
SapurV1A.0074s0390
Salix purpurea
SapurV1A.0074s0390
I
0.663
gene09311-v1.0-hybrid
Fragaria vesca
gene09311-v1.0-hybrid
I
0.663
orange1.1g025697m.g
Citrus sinensis
orange1.1g025697m.g
I
0.663
Sb08g005290
Sorghum bicolor
Sb08g005290
I
0.663
Ciclev10021859m.g
Citrus clementina
Ciclev10021859m.g
I
0.663
MDP0000265114
Malus domestica
MDP0000265114
I
0.663
PRUPE_ppa021779mg
Prunus persica
PRUPE_ppa021779mg
I
0.663
TCM_013357
Theobroma cacao
TCM_013357
I
0.663
cassava9262.m1
Manihot esculenta
cassava9262.m1
I
0.663