gene24269-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene24269-v1.0-hybrid T287370_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UNE16
M01270_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Lambert et al.(2019)
pTH9967 		0.702 0.745
AT3G24120
M00729_2.00 		Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN		 PBM
Chang et al.(2013)
pTH7086 		0.667 0.723
AT3G24120
M07085_2.00 		Arabidopsis thaliana
HAKATTCB
VGAATMTD		 Dap-seq
OMalley et al.(2016)
At3g24120_col_a 		0.667 0.723
AT3G24120
M07086_2.00 		Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN		 Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a 		0.667 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna24269.1-v1.0-hybrid Myb 63 114

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G113742 Zea mays GRMZM2G113742 I 0.715
GSMUA_Achr1G16440_001 Musa acuminata GSMUA_Achr1G16440_001 I 0.715
ORUFI08G13020 Oryza rufipogon ORUFI08G13020 I 0.715
OS08G0346400 Oryza sativa OS08G0346400 I 0.715
PGSC0003DMG400027229 Solanum tuberosum PGSC0003DMG400027229 I 0.715
GSMUA_Achr1G19430_001 Musa acuminata GSMUA_Achr1G19430_001 I 0.715
GSMUA_Achr3G11980_001 Musa acuminata GSMUA_Achr3G11980_001 I 0.715
LPERR08G09740 Leersia perrieri LPERR08G09740 I 0.715
ONIVA09G02600 Oryza nivara ONIVA09G02600 I 0.715
GSMUA_Achr9G19070_001 Musa acuminata GSMUA_Achr9G19070_001 I 0.715
OGLUM08G12590 Oryza glumaepatula OGLUM08G12590 I 0.715
Pavir.Fb00789 Panicum virgatum Pavir.Fb00789 I 0.715
OBART08G11780 Oryza barthii OBART08G11780 I 0.715
Solyc04g015290.2 Solanum lycopersicum Solyc04g015290.2 I 0.715
MDP0000192297 Malus domestica MDP0000192297 I 0.710
OPUNC09G03960 Oryza punctata OPUNC09G03960 I 0.705
GRMZM2G064197 Zea mays GRMZM2G064197 I 0.705
OMERI09G03700 Oryza meridionalis OMERI09G03700 I 0.705
Si030441m.g Setaria italica Si030441m.g I 0.705
OBART09G04520 Oryza barthii OBART09G04520 I 0.705
Traes_5DL_156E53683 Triticum aestivum Traes_5DL_156E53683 I 0.705
Traes_5BL_A28533902 Triticum aestivum Traes_5BL_A28533902 I 0.705
ONIVA09G04720 Oryza nivara ONIVA09G04720 I 0.705
OGLUM09G05270 Oryza glumaepatula OGLUM09G05270 I 0.705
MLOC_56761 Hordeum vulgare MLOC_56761 I 0.705
BRADI4G27607 Brachypodium distachyon BRADI4G27607 I 0.705
OS09G0299000 Oryza sativa OS09G0299000 I 0.705
LPERR09G03200 Leersia perrieri LPERR09G03200 I 0.705
Pavir.Bb01629 Panicum virgatum Pavir.Bb01629 I 0.705
ORUFI09G05100 Oryza rufipogon ORUFI09G05100 I 0.705
UNE16 Arabidopsis thaliana AT4G13640 D 0.702
Carubv10005375m.g Capsella rubella Carubv10005375m.g I 0.702
Bo8g035520 Brassica oleracea Bo8g035520 I 0.702
UNE16 Arabidopsis lyrata Al_scaffold_0007_2992 I 0.702
Thhalv10025876m.g Eutrema salsugineum Thhalv10025876m.g I 0.702
Bostr.2021s0124 Boechera stricta Bostr.2021s0124 I 0.702
Thhalv10002625m.g Eutrema salsugineum Thhalv10002625m.g I 0.702
Cagra.6748s0004 Capsella grandiflora Cagra.6748s0004 I 0.702
VIT_00s0475g00030 Vitis vinifera VIT_00s0475g00030 I 0.700
estExt_Genewise1.C_2010083 Physcomitrella patens estExt_Genewise1.C_2010083 I 0.694
mgf014157m Mimulus guttatus mgf014157m I 0.690
SELMODRAFT_47417 Selaginella moellendorffii SELMODRAFT_47417 I 0.690
SELMODRAFT_57477 Selaginella moellendorffii SELMODRAFT_57477 I 0.690
BRADI3G22297 Brachypodium distachyon BRADI3G22297 I 0.684
MDP0000269857 Malus domestica MDP0000269857 I 0.683
PGSC0003DMG400031299 Solanum tuberosum PGSC0003DMG400031299 I 0.681
OGLUM07G26720 Oryza glumaepatula OGLUM07G26720 I 0.678
ORUFI07G27670 Oryza rufipogon ORUFI07G27670 I 0.678
OBART07G26710 Oryza barthii OBART07G26710 I 0.678
OS07G0685300 Oryza sativa OS07G0685300 I 0.678
ORGLA07G0211200 Oryza glaberrima ORGLA07G0211200 I 0.678
OPUNC07G25120 Oryza punctata OPUNC07G25120 I 0.678
ONIVA07G26450 Oryza nivara ONIVA07G26450 I 0.678
OMERI07G23330 Oryza meridionalis OMERI07G23330 I 0.678
OLONG_007529 Oryza longistaminata OLONG_007529 I 0.678
LPERR07G23540 Leersia perrieri LPERR07G23540 I 0.678
BGIOSGA023696 Oryza indica BGIOSGA023696 I 0.678
OB07G32210 Oryza brachyantha OB07G32210 I 0.678
gw1.12.332.1 Physcomitrella patens gw1.12.332.1 I 0.677
fgenesh1_pg.scaffold_27000005 Physcomitrella patens fgenesh1_pg.scaffold_27000005 I 0.677
Gorai.010G247200 Gossypium raimondii Gorai.010G247200 I 0.676
TCM_030479 Theobroma cacao TCM_030479 I 0.676
Ciclev10016073m.g Citrus clementina Ciclev10016073m.g I 0.676
orange1.1g022072m.g Citrus sinensis orange1.1g022072m.g I 0.676
chr6.LjT02P05.130.nd Lotus japonicus chr6.LjT02P05.130.nd I 0.676
MTR_2g027800 Medicago truncatula MTR_2g027800 I 0.676
SapurV1A.0462s0100 Salix purpurea SapurV1A.0462s0100 I 0.675
Cucsa.256450 Cucumis sativus Cucsa.256450 I 0.675
cassava13078.valid.m1 Manihot esculenta cassava13078.valid.m1 I 0.675
29904.m002952 Ricinus communis 29904.m002952 I 0.675
Aquca_034_00135 Aquilegia coerulea Aquca_034_00135 I 0.675
PGSC0003DMG400004567 Solanum tuberosum PGSC0003DMG400004567 I 0.675
gene09780-v1.0-hybrid Fragaria vesca gene09780-v1.0-hybrid I 0.675
PK01305.1 Cannabis sativa PK01305.1 I 0.675
Pm009478 Prunus mume Pm009478 I 0.675
Solyc09g091880.2 Solanum lycopersicum Solyc09g091880.2 I 0.675
AMTR_s00089p00057120 Amborella trichopoda AMTR_s00089p00057120 I 0.675
cassava24344.valid.m1 Manihot esculenta cassava24344.valid.m1 I 0.675
cassava24345.valid.m1 Manihot esculenta cassava24345.valid.m1 I 0.675
VIT_05s0029g00060 Vitis vinifera VIT_05s0029g00060 I 0.675
TCM_020332 Theobroma cacao TCM_020332 I 0.675
Solyc12g098370.1 Solanum lycopersicum Solyc12g098370.1 I 0.675
TCM_002071 Theobroma cacao TCM_002071 I 0.675
cassava27734.m1 Manihot esculenta cassava27734.m1 I 0.675
SapurV1A.0058s0610 Salix purpurea SapurV1A.0058s0610 I 0.675
Gorai.006G222400 Gossypium raimondii Gorai.006G222400 I 0.675
Gorai.005G033900 Gossypium raimondii Gorai.005G033900 I 0.675
Lus10016676.g Linum usitatissimum Lus10016676.g I 0.675
Lus10007132.g Linum usitatissimum Lus10007132.g I 0.675
Gorai.011G158500 Gossypium raimondii Gorai.011G158500 I 0.675
orange1.1g021481m.g Citrus sinensis orange1.1g021481m.g I 0.675
MDP0000809773 Malus domestica MDP0000809773 I 0.675
Cla021740 Citrullus lanatus Cla021740 I 0.675
BRADI1G17400 Brachypodium distachyon BRADI1G17400 I 0.671
SELMODRAFT_35907 Selaginella moellendorffii SELMODRAFT_35907 I 0.670
30017.m000317 Ricinus communis 30017.m000317 I 0.667
Gorai.004G268700 Gossypium raimondii Gorai.004G268700 I 0.667
Carubv10020551m.g Capsella rubella Carubv10020551m.g I 0.667
Pm010939 Prunus mume Pm010939 I 0.667
Gorai.013G146200 Gossypium raimondii Gorai.013G146200 I 0.667
gene19709-v1.0-hybrid Fragaria vesca gene19709-v1.0-hybrid I 0.667
Cucsa.118610 Cucumis sativus Cucsa.118610 I 0.667
LjT35F06.40.nd Lotus japonicus LjT35F06.40.nd I 0.667
evm.TU.supercontig_32.94 Carica papaya evm.TU.supercontig_32.94 I 0.667
cassava13610.valid.m1 Manihot esculenta cassava13610.valid.m1 I 0.667
Lus10001754.g Linum usitatissimum Lus10001754.g I 0.667
cassava27573.m1 Manihot esculenta cassava27573.m1 I 0.667
Eucgr.H00055 Eucalyptus grandis Eucgr.H00055 I 0.667
Eucgr.F04475 Eucalyptus grandis Eucgr.F04475 I 0.667
Ciclev10005192m.g Citrus clementina Ciclev10005192m.g I 0.667
Lus10001844.g Linum usitatissimum Lus10001844.g I 0.667
Bostr.19424s0219 Boechera stricta Bostr.19424s0219 I 0.667
Cagra.0026s0024 Capsella grandiflora Cagra.0026s0024 I 0.667
Aquca_030_00287 Aquilegia coerulea Aquca_030_00287 I 0.667
Bostr.20129s0378 Boechera stricta Bostr.20129s0378 I 0.667
orange1.1g017478m.g Citrus sinensis orange1.1g017478m.g I 0.667
Pavir.Aa03369 Panicum virgatum Pavir.Aa03369 I 0.667
Pavir.Ab00498 Panicum virgatum Pavir.Ab00498 I 0.667
Pavir.Da00259 Panicum virgatum Pavir.Da00259 I 0.667
mgf016892m Mimulus guttatus mgf016892m I 0.667
SapurV1A.0093s0220 Salix purpurea SapurV1A.0093s0220 I 0.667
Thhalv10018760m.g Eutrema salsugineum Thhalv10018760m.g I 0.667
PK14629.1 Cannabis sativa PK14629.1 I 0.667
Carubv10015062m.g Capsella rubella Carubv10015062m.g I 0.667
MDP0000229587 Malus domestica MDP0000229587 I 0.667
SapurV1A.0149s0470 Salix purpurea SapurV1A.0149s0470 I 0.667
mgf010834m Mimulus guttatus mgf010834m I 0.667
MDP0000609912 Malus domestica MDP0000609912 I 0.667
Cagra.1725s0017 Capsella grandiflora Cagra.1725s0017 I 0.667
Cucsa.239950 Cucumis sativus Cucsa.239950 I 0.667
Si017608m.g Setaria italica Si017608m.g I 0.667
LPERR02G04870 Leersia perrieri LPERR02G04870 I 0.667
LPERR06G19840 Leersia perrieri LPERR06G19840 I 0.667
MLOC_69397 Hordeum vulgare MLOC_69397 I 0.667
GSMUA_Achr8G33560_001 Musa acuminata GSMUA_Achr8G33560_001 I 0.667
GSMUA_Achr3G23640_001 Musa acuminata GSMUA_Achr3G23640_001 I 0.667
BGIOSGA023423 Oryza indica BGIOSGA023423 I 0.667
GSMUA_Achr11G14430_001 Musa acuminata GSMUA_Achr11G14430_001 I 0.667
MTR_6g444980 Medicago truncatula MTR_6g444980 I 0.667
OB02G14830 Oryza brachyantha OB02G14830 I 0.667
OGLUM06G25170 Oryza glumaepatula OGLUM06G25170 I 0.667
Bo6g081020 Brassica oleracea Bo6g081020 I 0.667
OMERI06G23830 Oryza meridionalis OMERI06G23830 I 0.667
OGLUM02G05510 Oryza glumaepatula OGLUM02G05510 I 0.667
OBART02G05600 Oryza barthii OBART02G05600 I 0.667
AT3G24120 Arabidopsis thaliana AT3G24120 D 0.667
OB06G31630 Oryza brachyantha OB06G31630 I 0.667
GRMZM2G081671 Zea mays GRMZM2G081671 I 0.667
GRMZM2G052544 Zea mays GRMZM2G052544 I 0.667
Bra035118 Brassica rapa Bra035118 I 0.667
BRADI1G31837 Brachypodium distachyon BRADI1G31837 I 0.667
BRADI3G05500 Brachypodium distachyon BRADI3G05500 I 0.667
Bra028359 Brassica rapa Bra028359 I 0.667
Bra008411 Brassica rapa Bra008411 I 0.667
Bo6g123880 Brassica oleracea Bo6g123880 I 0.667
Bra003611 Brassica rapa Bra003611 I 0.667
F775_15522 Aegilops tauschii F775_15522 I 0.667
fgenesh1_pm.C_scaffold_3002126 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3002126 I 0.667
GLYMA15G29620 Glycine max GLYMA15G29620 I 0.667
GLYMA15G41740 Glycine max GLYMA15G41740 I 0.667
Bo1g101090 Brassica oleracea Bo1g101090 I 0.667
Bo2g095280 Brassica oleracea Bo2g095280 I 0.667
APL Arabidopsis lyrata fgenesh2_kg.2__2239__AT1G79430.2 I 0.667
GLYMA08G17400 Glycine max GLYMA08G17400 I 0.667
ONIVA02G05950 Oryza nivara ONIVA02G05950 I 0.667
OMERI02G06400 Oryza meridionalis OMERI02G06400 I 0.667
Traes_7BL_AE0BEF1BE Triticum aestivum Traes_7BL_AE0BEF1BE I 0.667
Traes_7DL_B26E341BE Triticum aestivum Traes_7DL_B26E341BE I 0.667
TCM_033672 Theobroma cacao TCM_033672 I 0.667
Solyc12g017370.1 Solanum lycopersicum Solyc12g017370.1 I 0.667
ONIVA03G43890 Oryza nivara ONIVA03G43890 I 0.667
Si006865m.g Setaria italica Si006865m.g I 0.667
TRIUR3_14321 Triticum urartu TRIUR3_14321 I 0.667
TRIUR3_22146 Triticum urartu TRIUR3_22146 I 0.667
Ca_25734 Cicer arietinum Ca_25734 I 0.667
AMTR_s00094p00028710 Amborella trichopoda AMTR_s00094p00028710 I 0.667
Ca_23533 Cicer arietinum Ca_23533 I 0.667
APL Arabidopsis thaliana AT1G79430 I 0.667
VIT_03s0017g02280 Vitis vinifera VIT_03s0017g02280 I 0.667
APL Vitis vinifera VIT_19s0085g00890 I 0.667
Sb04g004930 Sorghum bicolor Sb04g004930 I 0.667
Sb10g026550 Sorghum bicolor Sb10g026550 I 0.667
ORUFI02G05740 Oryza rufipogon ORUFI02G05740 I 0.667
ORUFI06G25680 Oryza rufipogon ORUFI06G25680 I 0.667
PGSC0003DMG400009658 Solanum tuberosum PGSC0003DMG400009658 I 0.667
ORGLA06G0200700 Oryza glaberrima ORGLA06G0200700 I 0.667
ORGLA02G0051300 Oryza glaberrima ORGLA02G0051300 I 0.667
OPUNC02G04780 Oryza punctata OPUNC02G04780 I 0.667
OPUNC06G21660 Oryza punctata OPUNC06G21660 I 0.667
POPTR_0008s08130 Populus trichocarpa POPTR_0008s08130 I 0.667
POPTR_0010s18130 Populus trichocarpa POPTR_0010s18130 I 0.667
PRUPE_ppa007417mg Prunus persica PRUPE_ppa007417mg I 0.667
SapurV1A.0089s0160 Salix purpurea SapurV1A.0089s0160 I 0.666
Lus10038735.g Linum usitatissimum Lus10038735.g I 0.666
Lus10039123.g Linum usitatissimum Lus10039123.g I 0.666
gw1.37.249.1 Physcomitrella patens gw1.37.249.1 I 0.666
POPTR_0016s00320 Populus trichocarpa POPTR_0016s00320 I 0.666
SELMODRAFT_438638 Selaginella moellendorffii SELMODRAFT_438638 I 0.665
SELMODRAFT_447259 Selaginella moellendorffii SELMODRAFT_447259 I 0.665
GSMUA_Achr8G21520_001 Musa acuminata GSMUA_Achr8G21520_001 I 0.663
PK25809.1 Cannabis sativa PK25809.1 I 0.663
29950.m001149 Ricinus communis 29950.m001149 I 0.663
GSMUA_Achr9G27510_001 Musa acuminata GSMUA_Achr9G27510_001 I 0.663
Pavir.Ba00251 Panicum virgatum Pavir.Ba00251 I 0.662
PK23608.1 Cannabis sativa PK23608.1 I 0.661
gene19866-v1.0-hybrid Fragaria vesca gene19866-v1.0-hybrid I 0.661
Cucsa.044400 Cucumis sativus Cucsa.044400 I 0.661
Ca_07938 Cicer arietinum Ca_07938 I 0.661
Pm009656 Prunus mume Pm009656 I 0.661
PRUPE_ppa009148mg Prunus persica PRUPE_ppa009148mg I 0.661
Cla014594 Citrullus lanatus Cla014594 I 0.661
GLYMA15G12930 Glycine max GLYMA15G12930 I 0.661
MDP0000151190 Malus domestica MDP0000151190 I 0.661
GLYMA09G02030 Glycine max GLYMA09G02030 I 0.661