Lus10019707.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10019707.g T288024_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.702 0.774
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.702 0.774
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.702 0.774
MYB46
M00877_2.00 		Arabidopsis thaliana
NAMCNDHHN
NDDHNGKTN		 PBM
Franco-Zorrilla et al.(2014)
MYB46 		0.697 0.742
MYB46
M11046_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB46_Q6 		0.697 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10019707 Myb 15 65
Lus10019707 Myb 71 116

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10016413.g Linum usitatissimum Lus10016413.g I 0.867
Lus10029520.g Linum usitatissimum Lus10029520.g I 0.749
Lus10039610.g Linum usitatissimum Lus10039610.g I 0.749
Cucsa.127860 Cucumis sativus Cucsa.127860 I 0.748
Lus10027369.g Linum usitatissimum Lus10027369.g I 0.744
Gorai.004G037300 Gossypium raimondii Gorai.004G037300 I 0.742
Cucsa.195180 Cucumis sativus Cucsa.195180 I 0.738
Cla017541 Citrullus lanatus Cla017541 I 0.738
Lus10002559.g Linum usitatissimum Lus10002559.g I 0.736
Lus10031281.g Linum usitatissimum Lus10031281.g I 0.732
cassava30676.valid.m1 Manihot esculenta cassava30676.valid.m1 I 0.723
PK13930.1 Cannabis sativa PK13930.1 I 0.723
Cla008683 Citrullus lanatus Cla008683 I 0.723
VIT_06s0004g02110 Vitis vinifera VIT_06s0004g02110 I 0.723
orange1.1g021164m.g Citrus sinensis orange1.1g021164m.g I 0.723
Aquca_014_00829 Aquilegia coerulea Aquca_014_00829 I 0.723
PRUPE_ppa009566mg Prunus persica PRUPE_ppa009566mg I 0.723
MDP0000204495 Malus domestica MDP0000204495 I 0.723
evm.TU.supercontig_84.59 Carica papaya evm.TU.supercontig_84.59 I 0.723
Ciclev10017658m.g Citrus clementina Ciclev10017658m.g I 0.723
MDP0000722954 Malus domestica MDP0000722954 I 0.723
Cucsa.065530 Cucumis sativus Cucsa.065530 I 0.723
Lus10031850.g Linum usitatissimum Lus10031850.g I 0.718
evm.TU.supercontig_640.1 Carica papaya evm.TU.supercontig_640.1 I 0.715
cassava5203.m1 Manihot esculenta cassava5203.m1 I 0.714
POPTR_0001s27430 Populus trichocarpa POPTR_0001s27430 I 0.712
POPTR_0009s06630 Populus trichocarpa POPTR_0009s06630 I 0.712
Eucgr.G03385 Eucalyptus grandis Eucgr.G03385 I 0.712
GLYMA13G07020 Glycine max GLYMA13G07020 I 0.712
SapurV1A.0027s0350 Salix purpurea SapurV1A.0027s0350 I 0.712
cassava32908.m1 Manihot esculenta cassava32908.m1 I 0.708
MTR_4g065017 Medicago truncatula MTR_4g065017 I 0.707
GLYMA12G06180 Glycine max GLYMA12G06180 I 0.706
gene27001-v1.0-hybrid Fragaria vesca gene27001-v1.0-hybrid I 0.705
gene14666-v1.0-hybrid Fragaria vesca gene14666-v1.0-hybrid I 0.705
orange1.1g019619m.g Citrus sinensis orange1.1g019619m.g I 0.703
Ciclev10033941m.g Citrus clementina Ciclev10033941m.g I 0.703
TCM_005885 Theobroma cacao TCM_005885 I 0.702
MYB83 Arabidopsis lyrata fgenesh2_kg.3__848__AT3G08500.1 I 0.702
Cagra.2991s0041 Capsella grandiflora Cagra.2991s0041 I 0.702
Carubv10014093m.g Capsella rubella Carubv10014093m.g I 0.702
Bra029696 Brassica rapa Bra029696 I 0.702
Thhalv10021052m.g Eutrema salsugineum Thhalv10021052m.g I 0.702
Bo5g139830 Brassica oleracea Bo5g139830 I 0.702
MYB83 Arabidopsis thaliana AT3G08500 D 0.702
GLYMA15G03920 Glycine max GLYMA15G03920 I 0.701
GLYMA13G41470 Glycine max GLYMA13G41470 I 0.701
PDK_20s1844641g001 Phoenix dactylifera PDK_20s1844641g001 I 0.698
GSMUA_AchrUn_randomG21080_001 Musa acuminata GSMUA_AchrUn_randomG21080_001 I 0.698
SapurV1A.0534s0230 Salix purpurea SapurV1A.0534s0230 I 0.698
PK14287.1 Cannabis sativa PK14287.1 I 0.698
Bostr.22252s0219 Boechera stricta Bostr.22252s0219 I 0.698
GLYMA11G14200 Glycine max GLYMA11G14200 I 0.698
AMTR_s00022p00252530 Amborella trichopoda AMTR_s00022p00252530 I 0.698
POPTR_0009s05860 Populus trichocarpa POPTR_0009s05860 I 0.698
Cagra.1535s0018 Capsella grandiflora Cagra.1535s0018 I 0.697
Thhalv10015560m.g Eutrema salsugineum Thhalv10015560m.g I 0.697
Bra008875 Brassica rapa Bra008875 I 0.697
Bo9g169270 Brassica oleracea Bo9g169270 I 0.697
MYB46 Arabidopsis thaliana AT5G12870 D 0.697
Bostr.2902s0023 Boechera stricta Bostr.2902s0023 I 0.697
Carubv10001573m.g Capsella rubella Carubv10001573m.g I 0.697
ATMYB46 Arabidopsis lyrata scaffold_601291.1 I 0.697
mgf024753m Mimulus guttatus mgf024753m I 0.696
cassava39861.m1 Manihot esculenta cassava39861.m1 I 0.695
Gorai.013G251100 Gossypium raimondii Gorai.013G251100 I 0.693
Eucgr.B03684 Eucalyptus grandis Eucgr.B03684 I 0.693
Gorai.006G129100 Gossypium raimondii Gorai.006G129100 I 0.693
Gorai.001G138800 Gossypium raimondii Gorai.001G138800 I 0.693
Gorai.004G172700 Gossypium raimondii Gorai.004G172700 I 0.691
MTR_3g028740 Medicago truncatula MTR_3g028740 I 0.691
evm.TU.supercontig_214.5 Carica papaya evm.TU.supercontig_214.5 I 0.688
Solyc08g081500.1 Solanum lycopersicum Solyc08g081500.1 I 0.688
MTR_2g097910 Medicago truncatula MTR_2g097910 I 0.688
PRUPE_ppa016923mg Prunus persica PRUPE_ppa016923mg I 0.687
MDP0000736994 Malus domestica MDP0000736994 I 0.687
GLYMA12G36630 Glycine max GLYMA12G36630 I 0.687
GLYMA19G05080 Glycine max GLYMA19G05080 I 0.687
Solyc11g065840.1 Solanum lycopersicum Solyc11g065840.1 I 0.687
Pm016295 Prunus mume Pm016295 I 0.687
PGSC0003DMG400007360 Solanum tuberosum PGSC0003DMG400007360 I 0.687
PGSC0003DMG400006868 Solanum tuberosum PGSC0003DMG400006868 I 0.685
Solyc01g087130.2 Solanum lycopersicum Solyc01g087130.2 I 0.685
POPTR_0001s26590 Populus trichocarpa POPTR_0001s26590 I 0.684
SapurV1A.0925s0070 Salix purpurea SapurV1A.0925s0070 I 0.684
MYB26 Vitis vinifera VIT_09s0002g01670 I 0.684
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I 0.680
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I 0.680
Carubv10015767m.g Capsella rubella Carubv10015767m.g I 0.680
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I 0.680
MYB26 Arabidopsis thaliana AT3G13890 I 0.680
Ca_05777 Cicer arietinum Ca_05777 I 0.679
GLYMA13G27310 Glycine max GLYMA13G27310 I 0.678
Cla003497 Citrullus lanatus Cla003497 I 0.677
Pm012272 Prunus mume Pm012272 I 0.676
LjSGA_026563.1 Lotus japonicus LjSGA_026563.1 I 0.676
Bra006166 Brassica rapa Bra006166 I 0.673
Bo3g008870 Brassica oleracea Bo3g008870 I 0.673
GSMUA_Achr2G07780_001 Musa acuminata GSMUA_Achr2G07780_001 I 0.671
Thhalv10028778m.g Eutrema salsugineum Thhalv10028778m.g I 0.669
Bo5g009920 Brassica oleracea Bo5g009920 I 0.667
Bo2g010970 Brassica oleracea Bo2g010970 I 0.667
Gorai.007G011100 Gossypium raimondii Gorai.007G011100 I 0.666
GSMUA_Achr8G31350_001 Musa acuminata GSMUA_Achr8G31350_001 I 0.665
AtMYB32 Arabidopsis lyrata scaffold_700628.1 I 0.665
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I 0.664
SapurV1A.0102s0340 Salix purpurea SapurV1A.0102s0340 I 0.663
SapurV1A.0390s0200 Salix purpurea SapurV1A.0390s0200 I 0.663
SapurV1A.1730s0020 Salix purpurea SapurV1A.1730s0020 I 0.663
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.662
LjSGA_115006.1 Lotus japonicus LjSGA_115006.1 I 0.662