CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ca00655
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Ca00655
T289055_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.686
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ca00655.1.p
Myb
31
78
KGPWTEEEDAQLVRFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL
Pavir.Ca00655.1.p
Myb
84
129
RGRITADEERLIVQLHAQWGSRWSRIARSLPGRTDNEIKNFWRTRT
Pavir.Ca00655.2.p
Myb
20
40
GRAAGLRRTGKSCRLRWVNYL
Pavir.Ca00655.2.p
Myb
46
91
RGRITADEERLIVQLHAQWGSRWSRIARSLPGRTDNEIKNFWRTRT
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
227 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy