Pavir.Ca00655 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ca00655 T289055_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.686 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00655.1.p Myb 31 78
Pavir.Ca00655.1.p Myb 84 129
Pavir.Ca00655.2.p Myb 20 40
Pavir.Ca00655.2.p Myb 46 91

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.909
Si022826m.g Setaria italica Si022826m.g I 0.904
Sb09g001590 Sorghum bicolor Sb09g001590 I 0.896
GRMZM2G305856 Zea mays GRMZM2G305856 I 0.896
Pavir.J04129 Panicum virgatum Pavir.J04129 I 0.887
Pavir.Ca00653 Panicum virgatum Pavir.Ca00653 I 0.887
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I 0.878
OLONG_004480 Oryza longistaminata OLONG_004480 I 0.878
OBART05G01080 Oryza barthii OBART05G01080 I 0.878
LPERR05G01030 Leersia perrieri LPERR05G01030 I 0.878
BGIOSGA019054 Oryza indica BGIOSGA019054 I 0.878
OB05G11070 Oryza brachyantha OB05G11070 I 0.878
OPUNC05G00970 Oryza punctata OPUNC05G00970 I 0.878
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I 0.878
ONIVA05G01120 Oryza nivara ONIVA05G01120 I 0.878
OMERI05G01150 Oryza meridionalis OMERI05G01150 I 0.878
BRADI2G37377 Brachypodium distachyon BRADI2G37377 I 0.870
Si024470m.g Setaria italica Si024470m.g I 0.864
GRMZM2G013581 Zea mays GRMZM2G013581 N 0.858
F775_14172 Aegilops tauschii F775_14172 I 0.847
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I 0.847
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I 0.847
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I 0.847
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.771
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.771
OB01G54920 Oryza brachyantha OB01G54920 I 0.770
OBART12G16130 Oryza barthii OBART12G16130 N 0.770
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N 0.770
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.770
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.770
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N 0.766
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N 0.766
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N 0.766
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.765
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.765
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.765
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.765
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.764
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I 0.763
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.762
OB12G23080 Oryza brachyantha OB12G23080 I 0.754
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.754
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.754
BGIOSGA035986 Oryza indica BGIOSGA035986 I 0.754
LPERR12G13390 Leersia perrieri LPERR12G13390 I 0.754
MYBAS2 Oryza sativa OS12G0567300 I 0.754
Si023104m.g Setaria italica Si023104m.g I 0.754
TRIUR3_16862 Triticum urartu TRIUR3_16862 I 0.754
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.754
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I 0.754
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I 0.754
F775_06315 Aegilops tauschii F775_06315 I 0.754
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I 0.754
GRMZM2G047626 Zea mays GRMZM2G047626 I 0.754
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.752
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.752
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.750
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I 0.749
OPUNC01G44650 Oryza punctata OPUNC01G44650 I 0.749
OBART01G45730 Oryza barthii OBART01G45730 I 0.749
BGIOSGA005283 Oryza indica BGIOSGA005283 I 0.749
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I 0.749
LPERR01G40120 Leersia perrieri LPERR01G40120 I 0.749
TRIUR3_22432 Triticum urartu TRIUR3_22432 I 0.748
F775_29427 Aegilops tauschii F775_29427 I 0.748
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I 0.748
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I 0.748
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.747
PK27824.1 Cannabis sativa PK27824.1 N 0.747
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.746
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.745
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.744
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N 0.742
MYB59 Arabidopsis thaliana AT5G59780 D 0.742
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N 0.742
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N 0.742
mgf001247m Mimulus guttatus mgf001247m N 0.742
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.742
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.742
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.742
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I 0.741
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.736
OB11G27690 Oryza brachyantha OB11G27690 I 0.734
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.730
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.730
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.727
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.727
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N 0.727
mgf009707m Mimulus guttatus mgf009707m N 0.726
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.725
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I 0.724
Pavir.J08441 Panicum virgatum Pavir.J08441 I 0.724
MDP0000169874 Malus domestica MDP0000169874 N 0.723
MDP0000139931 Malus domestica MDP0000139931 N 0.723
TCM_021433 Theobroma cacao TCM_021433 I 0.723
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.723
BGIOSGA013008 Oryza indica BGIOSGA013008 N 0.723
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.723
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I 0.722
Pavir.Ia02093 Panicum virgatum Pavir.Ia02093 N 0.720
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I 0.720
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.719
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I 0.719
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.719
Pavir.J23620 Panicum virgatum Pavir.J23620 N 0.718
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I 0.717
OS01G0975300 Oryza sativa OS01G0975300 N 0.715
TRIUR3_32110 Triticum urartu TRIUR3_32110 N 0.715
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I 0.715
Si003873m.g Setaria italica Si003873m.g N 0.715
Cla008413 Citrullus lanatus Cla008413 I 0.713
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.713
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N 0.712
MDP0000177010 Malus domestica MDP0000177010 I 0.711
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.711
MDP0000143156 Malus domestica MDP0000143156 I 0.711
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.710
LjSGA_032074.1 Lotus japonicus LjSGA_032074.1 N 0.709
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.709
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I 0.709
Cla013488 Citrullus lanatus Cla013488 I 0.708
MYB24 Arabidopsis thaliana AT5G40350 D 0.708
MYB21 Arabidopsis thaliana AT3G27810 I 0.707
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.706
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.706
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N 0.706
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.705
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.704
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N 0.703
mgf018110m Mimulus guttatus mgf018110m N 0.703
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.702
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.702
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.702
MYB27 Arabidopsis thaliana AT3G53200 D 0.701
PDK_20s1675721g001 Phoenix dactylifera PDK_20s1675721g001 N 0.700
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.699
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.698
MYB86 Arabidopsis thaliana AT5G26660 I 0.698
Traes_2BL_DAA2104F5 Triticum aestivum Traes_2BL_DAA2104F5 N 0.697
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.697
LjSGA_067208.1 Lotus japonicus LjSGA_067208.1 N 0.696
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I 0.696
Cucsa.089670 Cucumis sativus Cucsa.089670 N 0.694
Traes_5AL_D1807A4E0 Triticum aestivum Traes_5AL_D1807A4E0 N 0.694
Si026803m.g Setaria italica Si026803m.g I 0.694
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.694
Pavir.J33560 Panicum virgatum Pavir.J33560 I 0.694
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I 0.694
F775_22650 Aegilops tauschii F775_22650 N 0.694
MDP0000244980 Malus domestica MDP0000244980 N 0.693
mgf024109m Mimulus guttatus mgf024109m N 0.691
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.690
TRIUR3_16687 Triticum urartu TRIUR3_16687 I 0.689
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I 0.689
MLOC_78504 Hordeum vulgare MLOC_78504 I 0.689
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I 0.689
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I 0.689
F775_28589 Aegilops tauschii F775_28589 I 0.689
BGIOSGA033532 Oryza indica BGIOSGA033532 I 0.689
Pm005451 Prunus mume Pm005451 N 0.689
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I 0.689
MYBAS1 Oryza sativa OS11G0700500 I 0.689
MDP0000470422 Malus domestica MDP0000470422 N 0.688
mgf025691m Mimulus guttatus mgf025691m I 0.688
mgf020363m Mimulus guttatus mgf020363m I 0.688
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N 0.687
MTR_1g062940 Medicago truncatula MTR_1g062940 N 0.686
Bra018223 Brassica rapa Bra018223 I 0.686
TCM_041904 Theobroma cacao TCM_041904 I 0.686
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I 0.686
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.686
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.686
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.686
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.686
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.686
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.686
Pm000809 Prunus mume Pm000809 I 0.686
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.686
Bo3g130340 Brassica oleracea Bo3g130340 I 0.686
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.684
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.683
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I 0.682
mgf021749m Mimulus guttatus mgf021749m N 0.682
Pavir.J24653 Panicum virgatum Pavir.J24653 N 0.680
Cla023001 Citrullus lanatus Cla023001 N 0.680
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.680
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N 0.680
Lus10005886.g Linum usitatissimum Lus10005886.g I 0.680
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.679
Bo5g131980 Brassica oleracea Bo5g131980 N 0.679
orange1.1g038824m.g Citrus sinensis orange1.1g038824m.g N 0.679
MDP0000475808 Malus domestica MDP0000475808 N 0.678
TCM_005371 Theobroma cacao TCM_005371 I 0.678
TRIUR3_12300 Triticum urartu TRIUR3_12300 N 0.677
Eucgr.J00892 Eucalyptus grandis Eucgr.J00892 N 0.677
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.677
AtMYB27 Vitis vinifera VIT_08s0007g04830 I 0.676
Ca_02593 Cicer arietinum Ca_02593 I 0.676
TT2 Arabidopsis thaliana AT5G35550 I 0.676
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.675
WER Arabidopsis thaliana AT5G14750 D 0.674
29788.m000340 Ricinus communis 29788.m000340 I 0.674
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I 0.674
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N 0.673
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.672
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I 0.672
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.672
Bra009910 Brassica rapa Bra009910 N 0.671
MDP0000153773 Malus domestica MDP0000153773 N 0.671
Bo2g011790 Brassica oleracea Bo2g011790 N 0.670
Bo8g082570 Brassica oleracea Bo8g082570 I 0.669
F775_32151 Aegilops tauschii F775_32151 N 0.668
evm.TU.supercontig_92.99 Carica papaya evm.TU.supercontig_92.99 I 0.667
Thhalv10010915m.g Eutrema salsugineum Thhalv10010915m.g I 0.667
GLYMA10G06680 Glycine max GLYMA10G06680 N 0.667
AtMYB27 Arabidopsis lyrata fgenesh2_kg.5__1687__AT3G53200.1 I 0.667
Pavir.Ga02684 Panicum virgatum Pavir.Ga02684 I 0.666
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I 0.665
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I 0.665
SapurV1A.0004s0360 Salix purpurea SapurV1A.0004s0360 I 0.665
Carubv10019409m.g Capsella rubella Carubv10019409m.g I 0.665
Traes_3DL_75F8A05CF Triticum aestivum Traes_3DL_75F8A05CF N 0.664
GLYMA14G10483 Glycine max GLYMA14G10483 I 0.663
Traes_2DL_304E62CCE Triticum aestivum Traes_2DL_304E62CCE N 0.662
Gorai.004G145800 Gossypium raimondii Gorai.004G145800 I 0.662
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.662