Pavir.Hb00058 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Hb00058 T289238_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.778 0.828
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Hb00058.1.p Myb 10 57
Pavir.Hb00058.1.p Myb 63 108
Pavir.Hb00058.2.p Myb 1 43
Pavir.Hb00058.3.p Myb 1 43

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb05g027370 Sorghum bicolor Sb05g027370 N 0.909
Si026803m.g Setaria italica Si026803m.g I 0.909
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.903
Si023104m.g Setaria italica Si023104m.g I 0.903
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.903
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.903
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.903
MLOC_78504 Hordeum vulgare MLOC_78504 I 0.891
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I 0.887
TRIUR3_16687 Triticum urartu TRIUR3_16687 I 0.887
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I 0.887
MYBAS1 Oryza sativa OS11G0700500 I 0.887
F775_28589 Aegilops tauschii F775_28589 I 0.887
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I 0.887
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I 0.887
BGIOSGA033532 Oryza indica BGIOSGA033532 I 0.887
Traes_1BS_060C24872 Triticum aestivum Traes_1BS_060C24872 N 0.885
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.885
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.883
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I 0.879
Pavir.J08441 Panicum virgatum Pavir.J08441 I 0.879
Aquca_027_00267 Aquilegia coerulea Aquca_027_00267 N 0.877
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.869
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.868
Pavir.J11826 Panicum virgatum Pavir.J11826 I 0.857
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.857
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.857
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I 0.852
Pavir.J33560 Panicum virgatum Pavir.J33560 I 0.849
OB11G27690 Oryza brachyantha OB11G27690 I 0.842
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I 0.842
MYBAS2 Oryza sativa OS12G0567300 I 0.838
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I 0.838
GRMZM2G047626 Zea mays GRMZM2G047626 I 0.838
BGIOSGA035986 Oryza indica BGIOSGA035986 I 0.838
OB12G23080 Oryza brachyantha OB12G23080 I 0.838
TRIUR3_16862 Triticum urartu TRIUR3_16862 I 0.838
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I 0.838
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I 0.838
F775_06315 Aegilops tauschii F775_06315 I 0.838
LPERR12G13390 Leersia perrieri LPERR12G13390 I 0.838
Sb05g027360 Sorghum bicolor Sb05g027360 I 0.834
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.822
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.820
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N 0.817
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.817
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.817
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.817
cassava29437.valid.m1 Manihot esculenta cassava29437.valid.m1 N 0.817
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.817
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N 0.817
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.817
Carubv10027237m.g Capsella rubella Carubv10027237m.g N 0.817
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.817
Solyc06g005310.2 Solanum lycopersicum Solyc06g005310.2 N 0.817
MYB59 Arabidopsis thaliana AT5G59780 D 0.817
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.817
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.813
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.813
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.810
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.810
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I 0.807
MDP0000177010 Malus domestica MDP0000177010 I 0.802
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I 0.802
cassava13590.valid.m1 Manihot esculenta cassava13590.valid.m1 N 0.799
Ca_16710 Cicer arietinum Ca_16710 N 0.799
Lus10040861.g Linum usitatissimum Lus10040861.g N 0.799
MDP0000143156 Malus domestica MDP0000143156 I 0.797
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.795
Cla008413 Citrullus lanatus Cla008413 I 0.795
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.795
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.792
Solyc06g075660.2 Solanum lycopersicum Solyc06g075660.2 N 0.791
PGSC0003DMG400030397 Solanum tuberosum PGSC0003DMG400030397 N 0.791
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I 0.789
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.782
Cla013488 Citrullus lanatus Cla013488 I 0.782
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.782
mgf025691m Mimulus guttatus mgf025691m I 0.780
mgf020363m Mimulus guttatus mgf020363m I 0.780
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.778
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.778
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I 0.778
Bra018223 Brassica rapa Bra018223 I 0.778
TCM_041904 Theobroma cacao TCM_041904 I 0.778
Pm000809 Prunus mume Pm000809 I 0.778
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.778
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.778
Bo3g130340 Brassica oleracea Bo3g130340 I 0.778
PGSC0003DMG402010883 Solanum tuberosum PGSC0003DMG402010883 N 0.776
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.775
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I 0.773
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I 0.773
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.773
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.772
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I 0.771
Lus10005886.g Linum usitatissimum Lus10005886.g I 0.769
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.768
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.768
Ca_02593 Cicer arietinum Ca_02593 I 0.767
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I 0.766
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.766
29788.m000340 Ricinus communis 29788.m000340 I 0.766
F775_29427 Aegilops tauschii F775_29427 I 0.766
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I 0.766
TRIUR3_22432 Triticum urartu TRIUR3_22432 I 0.766
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I 0.766
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.761
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I 0.761
OB01G54920 Oryza brachyantha OB01G54920 I 0.751
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I 0.748
Bo2g025410 Brassica oleracea Bo2g025410 I 0.748
Bra020289 Brassica rapa Bra020289 I 0.748
PK16488.1 Cannabis sativa PK16488.1 N 0.745
Ciclev10006469m.g Citrus clementina Ciclev10006469m.g N 0.745
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.743
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I 0.742
Bra006694 Brassica rapa Bra006694 I 0.739
Traes_2DL_77F235694 Triticum aestivum Traes_2DL_77F235694 N 0.738
GLYMA11G15180 Glycine max GLYMA11G15180 I 0.737
GLYMA12G07110 Glycine max GLYMA12G07110 I 0.728
Bo9g140750 Brassica oleracea Bo9g140750 I 0.727
Bra002533 Brassica rapa Bra002533 I 0.727
BRADI2G37377 Brachypodium distachyon BRADI2G37377 I 0.726
OBART01G45730 Oryza barthii OBART01G45730 I 0.723
BGIOSGA005283 Oryza indica BGIOSGA005283 I 0.723
LPERR01G40120 Leersia perrieri LPERR01G40120 I 0.723
OPUNC01G44650 Oryza punctata OPUNC01G44650 I 0.723
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I 0.723
PK22178.1 Cannabis sativa PK22178.1 N 0.723
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I 0.723
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I 0.714
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I 0.714
F775_14172 Aegilops tauschii F775_14172 I 0.714
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I 0.714
Pavir.J04129 Panicum virgatum Pavir.J04129 I 0.713
Pavir.Ca00653 Panicum virgatum Pavir.Ca00653 I 0.713
POPTR_0008s17350 Populus trichocarpa POPTR_0008s17350 I 0.713
Ca_11427 Cicer arietinum Ca_11427 N 0.712
30072.m000986 Ricinus communis 30072.m000986 N 0.712
ONIVA05G01120 Oryza nivara ONIVA05G01120 I 0.708
LPERR05G01030 Leersia perrieri LPERR05G01030 I 0.708
OMERI05G01150 Oryza meridionalis OMERI05G01150 I 0.708
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I 0.708
OBART05G01080 Oryza barthii OBART05G01080 I 0.708
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I 0.708
OB05G11070 Oryza brachyantha OB05G11070 I 0.708
BGIOSGA019054 Oryza indica BGIOSGA019054 I 0.708
OLONG_004480 Oryza longistaminata OLONG_004480 I 0.708
OPUNC05G00970 Oryza punctata OPUNC05G00970 I 0.708
LjT39N06.160.nd Lotus japonicus LjT39N06.160.nd N 0.706
TCM_022293 Theobroma cacao TCM_022293 I 0.697
Si022826m.g Setaria italica Si022826m.g I 0.696
Cagra.10348s0001 Capsella grandiflora Cagra.10348s0001 N 0.696
Si024470m.g Setaria italica Si024470m.g I 0.694
GRMZM2G305856 Zea mays GRMZM2G305856 I 0.694
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I 0.694
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.694
Sb09g001590 Sorghum bicolor Sb09g001590 I 0.694
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I 0.694
MDP0000581761 Malus domestica MDP0000581761 N 0.693
fgenesh2_kg.397__1__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.397__1__AT3G24310.1 N 0.691
Ciclev10009700m.g Citrus clementina Ciclev10009700m.g N 0.690
Traes_2AL_E2F8D46CE Triticum aestivum Traes_2AL_E2F8D46CE N 0.688
Thhalv10022197m.g Eutrema salsugineum Thhalv10022197m.g N 0.687
Aquca_030_00038 Aquilegia coerulea Aquca_030_00038 I 0.687
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I 0.686
GLYMA03G41965 Glycine max GLYMA03G41965 N 0.685
OBART01G27550 Oryza barthii OBART01G27550 N 0.683
mgf018170m Mimulus guttatus mgf018170m N 0.683
POPTR_0010s07450 Populus trichocarpa POPTR_0010s07450 I 0.681
SapurV1A.2099s0020 Salix purpurea SapurV1A.2099s0020 N 0.678
MYB3 Arabidopsis thaliana AT1G22640 D 0.678
SapurV1A.2154s0020 Salix purpurea SapurV1A.2154s0020 N 0.678
Solyc09g090790.2 Solanum lycopersicum Solyc09g090790.2 I 0.678
PGSC0003DMG400001504 Solanum tuberosum PGSC0003DMG400001504 I 0.678
PK07010.1 Cannabis sativa PK07010.1 N 0.676
Aquca_025_00059 Aquilegia coerulea Aquca_025_00059 I 0.673
GLYMA17G17560 Glycine max GLYMA17G17560 I 0.672
Gorai.005G054900 Gossypium raimondii Gorai.005G054900 I 0.672
GLYMA10G26681 Glycine max GLYMA10G26681 I 0.672
Ca_07872 Cicer arietinum Ca_07872 I 0.669
VIT_05s0049g02260 Vitis vinifera VIT_05s0049g02260 I 0.669
SapurV1A.0096s0360 Salix purpurea SapurV1A.0096s0360 I 0.669
PRUPE_ppa024234mg Prunus persica PRUPE_ppa024234mg I 0.669
MTR_1g045610 Medicago truncatula MTR_1g045610 I 0.669
Pm009050 Prunus mume Pm009050 I 0.669
orange1.1g047839m.g Citrus sinensis orange1.1g047839m.g I 0.669
evm.TU.supercontig_59.23 Carica papaya evm.TU.supercontig_59.23 I 0.669
gene28293-v1.0-hybrid Fragaria vesca gene28293-v1.0-hybrid I 0.669
Gorai.006G073500 Gossypium raimondii Gorai.006G073500 I 0.669
Gorai.006G254200 Gossypium raimondii Gorai.006G254200 I 0.669
Ciclev10006914m.g Citrus clementina Ciclev10006914m.g I 0.669
Eucgr.H02896 Eucalyptus grandis Eucgr.H02896 I 0.669
cassava24463.valid.m1 Manihot esculenta cassava24463.valid.m1 I 0.669
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I 0.669
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I 0.669
Carubv10019409m.g Capsella rubella Carubv10019409m.g I 0.669
Gorai.011G122800 Gossypium raimondii Gorai.011G122800 I 0.667
Lus10023711.g Linum usitatissimum Lus10023711.g I 0.664
Gorai.004G064100 Gossypium raimondii Gorai.004G064100 I 0.662
GLYMA08G27660 Glycine max GLYMA08G27660 I 0.661
AMTR_s00039p00172240 Amborella trichopoda AMTR_s00039p00172240 I 0.661