CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra018223
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra018223
T267905_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.881
0.968
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra018223.1-P
Myb
10
57
KGPWTEQEDIILVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL
Bra018223.1-P
Myb
63
108
RGKMTPQEERLVTELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHM
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
173 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo3g130340
Brassica oleracea
Bo3g130340
I
0.909
orange1.1g023677m.g
Citrus sinensis
orange1.1g023677m.g
I
0.881
ATMYB48-1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5001097
I
0.881
Carubv10017875m.g
Capsella rubella
Carubv10017875m.g
I
0.881
MYB59
Arabidopsis lyrata
fgenesh2_kg.8__1928__AT5G59780.3
I
0.881
TCM_041904
Theobroma cacao
TCM_041904
I
0.881
Thhalv10002648m.g
Eutrema salsugineum
Thhalv10002648m.g
I
0.881
ATMYB48
Arabidopsis thaliana
AT3G46130
I
0.881
Thhalv10014524m.g
Eutrema salsugineum
Thhalv10014524m.g
I
0.881
MYB59
Arabidopsis thaliana
AT5G59780
D
0.881
Gorai.001G107900
Gossypium raimondii
Gorai.001G107900
I
0.878
POPTR_0001s24220
Populus trichocarpa
POPTR_0001s24220
I
0.878
PRUPE_ppa015954mg
Prunus persica
PRUPE_ppa015954mg
I
0.872
MDP0000177010
Malus domestica
MDP0000177010
I
0.872
Pm000809
Prunus mume
Pm000809
I
0.872
Lus10005886.g
Linum usitatissimum
Lus10005886.g
I
0.872
29788.m000340
Ricinus communis
29788.m000340
I
0.869
GLYMA13G40830
Glycine max
GLYMA13G40830
I
0.869
cassava13589.valid.m1
Manihot esculenta
cassava13589.valid.m1
I
0.869
GLYMA15G04620
Glycine max
GLYMA15G04620
I
0.869
MDP0000143156
Malus domestica
MDP0000143156
I
0.867
Cla008413
Citrullus lanatus
Cla008413
I
0.865
Cucsa.213500
Cucumis sativus
Cucsa.213500
I
0.865
evm.TU.supercontig_190.35
Carica papaya
evm.TU.supercontig_190.35
I
0.864
MTR_4g063100
Medicago truncatula
MTR_4g063100
I
0.863
MTR_2g096380
Medicago truncatula
MTR_2g096380
I
0.862
Ca_02593
Cicer arietinum
Ca_02593
I
0.862
Cla013488
Citrullus lanatus
Cla013488
I
0.861
Cucsa.379880
Cucumis sativus
Cucsa.379880
I
0.861
Gorai.003G136400
Gossypium raimondii
Gorai.003G136400
I
0.855
SapurV1A.0008s0950
Salix purpurea
SapurV1A.0008s0950
I
0.853
Gorai.013G265300
Gossypium raimondii
Gorai.013G265300
I
0.853
SapurV1A.0008s0940
Salix purpurea
SapurV1A.0008s0940
I
0.853
Bo2g025410
Brassica oleracea
Bo2g025410
I
0.851
Bra020289
Brassica rapa
Bra020289
I
0.851
VIT_06s0004g04140
Vitis vinifera
VIT_06s0004g04140
I
0.842
SapurV1A.0489s0220
Salix purpurea
SapurV1A.0489s0220
I
0.838
POPTR_0009s03240
Populus trichocarpa
POPTR_0009s03240
I
0.838
SapurV1A.0040s0010
Salix purpurea
SapurV1A.0040s0010
I
0.838
Bra006694
Brassica rapa
Bra006694
I
0.833
Bra002533
Brassica rapa
Bra002533
I
0.830
GLYMA12G07110
Glycine max
GLYMA12G07110
I
0.823
GSMUA_Achr10G26730_001
Musa acuminata
GSMUA_Achr10G26730_001
I
0.823
mgf025691m
Mimulus guttatus
mgf025691m
I
0.818
mgf020363m
Mimulus guttatus
mgf020363m
I
0.818
Solyc11g073120.1
Solanum lycopersicum
Solyc11g073120.1
I
0.816
PGSC0003DMG400015536
Solanum tuberosum
PGSC0003DMG400015536
I
0.816
GLYMA11G15180
Glycine max
GLYMA11G15180
I
0.814
GSMUA_Achr2G16200_001
Musa acuminata
GSMUA_Achr2G16200_001
I
0.813
Solyc06g005330.2
Solanum lycopersicum
Solyc06g005330.2
I
0.805
GSMUA_Achr7G18200_001
Musa acuminata
GSMUA_Achr7G18200_001
I
0.803
Bo9g140750
Brassica oleracea
Bo9g140750
I
0.800
GSMUA_Achr10G13520_001
Musa acuminata
GSMUA_Achr10G13520_001
I
0.794
GSMUA_Achr6G15370_001
Musa acuminata
GSMUA_Achr6G15370_001
I
0.793
GSMUA_Achr9G28370_001
Musa acuminata
GSMUA_Achr9G28370_001
I
0.792
BRADI2G62510
Brachypodium distachyon
BRADI2G62510
I
0.787
Si026803m.g
Setaria italica
Si026803m.g
I
0.778
OB01G54920
Oryza brachyantha
OB01G54920
I
0.778
Pavir.Hb00058
Panicum virgatum
Pavir.Hb00058
I
0.778
Pavir.J08441
Panicum virgatum
Pavir.J08441
I
0.778
GSMUA_Achr11G24690_001
Musa acuminata
GSMUA_Achr11G24690_001
I
0.776
GSMUA_Achr5G28350_001
Musa acuminata
GSMUA_Achr5G28350_001
I
0.775
Traes_4BS_61B30E3E4
Triticum aestivum
Traes_4BS_61B30E3E4
I
0.773
TRIUR3_16687
Triticum urartu
TRIUR3_16687
I
0.773
ORGLA11G0187400
Oryza glaberrima
ORGLA11G0187400
I
0.773
MLOC_78504
Hordeum vulgare
MLOC_78504
I
0.773
MYBAS1
Oryza sativa
OS11G0700500
I
0.773
BGIOSGA033532
Oryza indica
BGIOSGA033532
I
0.773
ORUFI11G25190
Oryza rufipogon
ORUFI11G25190
I
0.773
Traes_4DS_0ECE7A421
Triticum aestivum
Traes_4DS_0ECE7A421
I
0.773
F775_28589
Aegilops tauschii
F775_28589
I
0.773
Traes_4AL_8B52D54FD
Triticum aestivum
Traes_4AL_8B52D54FD
I
0.765
F775_06315
Aegilops tauschii
F775_06315
I
0.757
TRIUR3_16862
Triticum urartu
TRIUR3_16862
I
0.757
MLOC_52439
Hordeum vulgare
MLOC_52439
I
0.757
GRMZM2G048136
Zea mays
GRMZM2G048136
I
0.755
BGIOSGA005283
Oryza indica
BGIOSGA005283
I
0.753
OBART01G45730
Oryza barthii
OBART01G45730
I
0.753
LPERR01G40120
Leersia perrieri
LPERR01G40120
I
0.753
ORUFI01G49220
Oryza rufipogon
ORUFI01G49220
I
0.753
ORGLA01G0394700
Oryza glaberrima
ORGLA01G0394700
I
0.753
OPUNC01G44650
Oryza punctata
OPUNC01G44650
I
0.753
AMTR_s00145p00098450
Amborella trichopoda
AMTR_s00145p00098450
I
0.752
TRAES3BF065400010CFD_g
Triticum aestivum
TRAES3BF065400010CFD_g
I
0.751
F775_29427
Aegilops tauschii
F775_29427
I
0.751
Traes_3AL_A8AF980F3
Triticum aestivum
Traes_3AL_A8AF980F3
I
0.751
TRIUR3_22432
Triticum urartu
TRIUR3_22432
I
0.751
Pavir.J33560
Panicum virgatum
Pavir.J33560
I
0.748
Pavir.J11500
Panicum virgatum
Pavir.J11500
I
0.748
Si023104m.g
Setaria italica
Si023104m.g
I
0.748
Sb08g018580
Sorghum bicolor
Sb08g018580
I
0.748
Pavir.Ca02588
Panicum virgatum
Pavir.Ca02588
I
0.748
MYBAS2
Oryza sativa
OS12G0567300
I
0.748
GRMZM2G130149
Zea mays
GRMZM2G130149
I
0.748
ORGLA12G0206100
Oryza glaberrima
ORGLA12G0206100
I
0.748
ORGLA12G0141600
Oryza glaberrima
ORGLA12G0141600
I
0.748
LPERR12G13390
Leersia perrieri
LPERR12G13390
I
0.748
OB12G23080
Oryza brachyantha
OB12G23080
I
0.748
ORUFI12G17930
Oryza rufipogon
ORUFI12G17930
I
0.748
GRMZM2G047626
Zea mays
GRMZM2G047626
I
0.748
BGIOSGA035986
Oryza indica
BGIOSGA035986
I
0.748
Pavir.J11826
Panicum virgatum
Pavir.J11826
I
0.743
BRADI4G04050
Brachypodium distachyon
BRADI4G04050
I
0.731
GSMUA_Achr8G34340_001
Musa acuminata
GSMUA_Achr8G34340_001
I
0.728
OB11G27690
Oryza brachyantha
OB11G27690
I
0.728
GSMUA_Achr8G02640_001
Musa acuminata
GSMUA_Achr8G02640_001
I
0.723
GSMUA_Achr10G03710_001
Musa acuminata
GSMUA_Achr10G03710_001
I
0.718
Sb05g027360
Sorghum bicolor
Sb05g027360
I
0.711
Traes_1BS_B44ECE28C
Triticum aestivum
Traes_1BS_B44ECE28C
I
0.707
F775_14172
Aegilops tauschii
F775_14172
I
0.707
Traes_1DS_47E2D90AC1
Triticum aestivum
Traes_1DS_47E2D90AC1
I
0.707
Traes_1DS_47E2D90AC
Triticum aestivum
Traes_1DS_47E2D90AC
I
0.707
Pavir.J04129
Panicum virgatum
Pavir.J04129
I
0.705
Pavir.Ca00653
Panicum virgatum
Pavir.Ca00653
I
0.705
Pavir.Gb02200
Panicum virgatum
Pavir.Gb02200
I
0.703
BRADI2G37377
Brachypodium distachyon
BRADI2G37377
I
0.701
OLONG_004480
Oryza longistaminata
OLONG_004480
I
0.700
BGIOSGA019054
Oryza indica
BGIOSGA019054
I
0.700
ONIVA05G01120
Oryza nivara
ONIVA05G01120
I
0.700
OMERI05G01150
Oryza meridionalis
OMERI05G01150
I
0.700
OPUNC05G00970
Oryza punctata
OPUNC05G00970
I
0.700
ORUFI05G01110
Oryza rufipogon
ORUFI05G01110
I
0.700
OBART05G01080
Oryza barthii
OBART05G01080
I
0.700
OGLUM05G01090
Oryza glumaepatula
OGLUM05G01090
I
0.700
OB05G11070
Oryza brachyantha
OB05G11070
I
0.700
LPERR05G01030
Leersia perrieri
LPERR05G01030
I
0.700
Gorai.009G413600
Gossypium raimondii
Gorai.009G413600
I
0.698
Bostr.25993s0044
Boechera stricta
Bostr.25993s0044
I
0.696
Cagra.6400s0003
Capsella grandiflora
Cagra.6400s0003
I
0.696
Bra021389
Brassica rapa
Bra021389
I
0.696
Bo00954s080
Brassica oleracea
Bo00954s080
I
0.696
ATMYB2
Arabidopsis lyrata
fgenesh2_kg.4__2955__AT2G47190.1
I
0.696
Bo4g198510
Brassica oleracea
Bo4g198510
I
0.696
Bra004473
Brassica rapa
Bra004473
I
0.696
Carubv10023831m.g
Capsella rubella
Carubv10023831m.g
I
0.696
Thhalv10001584m.g
Eutrema salsugineum
Thhalv10001584m.g
I
0.696
ATMYB2
Arabidopsis thaliana
AT2G47190
I
0.696
POPTR_0008s17350
Populus trichocarpa
POPTR_0008s17350
I
0.690
Si022826m.g
Setaria italica
Si022826m.g
I
0.688
Pavir.Ca00655
Panicum virgatum
Pavir.Ca00655
I
0.686
GRMZM2G305856
Zea mays
GRMZM2G305856
I
0.686
Si024470m.g
Setaria italica
Si024470m.g
I
0.686
Pavir.J36591
Panicum virgatum
Pavir.J36591
I
0.686
Sb09g001590
Sorghum bicolor
Sb09g001590
I
0.686
Traes_6AL_89BA7115C
Triticum aestivum
Traes_6AL_89BA7115C
I
0.680
Traes_6DL_FDFCBA57D
Triticum aestivum
Traes_6DL_FDFCBA57D
I
0.680
TRIUR3_31527
Triticum urartu
TRIUR3_31527
I
0.680
F775_23572
Aegilops tauschii
F775_23572
I
0.680
Traes_6DL_FDFCBA57D1
Triticum aestivum
Traes_6DL_FDFCBA57D1
I
0.680
Bo7g033260
Brassica oleracea
Bo7g033260
I
0.679
Lus10009037.g
Linum usitatissimum
Lus10009037.g
I
0.679
Bra015029
Brassica rapa
Bra015029
I
0.679
Bo1g098860
Brassica oleracea
Bo1g098860
I
0.675
MYB305
Arabidopsis thaliana
AT3G24310
I
0.675
Thhalv10002634m.g
Eutrema salsugineum
Thhalv10002634m.g
I
0.675
Bo3g083130
Brassica oleracea
Bo3g083130
I
0.675
Bostr.19424s0195
Boechera stricta
Bostr.19424s0195
I
0.675
Carubv10014367m.g
Capsella rubella
Carubv10014367m.g
I
0.675
Bra001941
Brassica rapa
Bra001941
I
0.675
mgf004640m
Mimulus guttatus
mgf004640m
I
0.675
fgenesh2_kg.3__2645__AT3G24310.1
Arabidopsis lyrata
fgenesh2_kg.3__2645__AT3G24310.1
I
0.675
Cagra.0454s0003
Capsella grandiflora
Cagra.0454s0003
I
0.675
Bra028369
Brassica rapa
Bra028369
I
0.675
AMTR_s01267p00006490
Amborella trichopoda
AMTR_s01267p00006490
I
0.671
orange1.1g044161m.g
Citrus sinensis
orange1.1g044161m.g
I
0.669
Thhalv10010915m.g
Eutrema salsugineum
Thhalv10010915m.g
I
0.668
Carubv10019409m.g
Capsella rubella
Carubv10019409m.g
I
0.666
Aquca_025_00059
Aquilegia coerulea
Aquca_025_00059
I
0.666
Bostr.9544s0002
Boechera stricta
Bostr.9544s0002
I
0.666
Cagra.0612s0043
Capsella grandiflora
Cagra.0612s0043
I
0.666
TCM_022293
Theobroma cacao
TCM_022293
I
0.665
AtMYB27
Arabidopsis lyrata
fgenesh2_kg.5__1687__AT3G53200.1
I
0.664
Cucsa.252400
Cucumis sativus
Cucsa.252400
I
0.661