CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Gb01276
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Gb01276
T289233_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Gb01276.1.p
Myb
16
38
VFSSLASLKRSGKSCRLRWVNYL
Pavir.Gb01276.1.p
Myb
44
89
RGKITPQEESIIVQLHALWGNRWSTIARSLPGRTDNEIKNYWRTHF
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
126 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J23620
Panicum virgatum
Pavir.J23620
N
0.839
Traes_2BL_DAA2104F5
Triticum aestivum
Traes_2BL_DAA2104F5
N
0.830
MDP0000139931
Malus domestica
MDP0000139931
N
0.817
MDP0000169874
Malus domestica
MDP0000169874
N
0.817
MYB27
Arabidopsis thaliana
AT3G53200
D
0.789
Bostr.26833s0259
Boechera stricta
Bostr.26833s0259
N
0.776
MTR_4g063100
Medicago truncatula
MTR_4g063100
I
0.771
Gorai.001G107900
Gossypium raimondii
Gorai.001G107900
I
0.770
Cagra.1317s0038
Capsella grandiflora
Cagra.1317s0038
N
0.770
Bostr.18473s0331
Boechera stricta
Bostr.18473s0331
I
0.770
Cagra.10637s0001
Capsella grandiflora
Cagra.10637s0001
I
0.770
gene13970-v1.0-hybrid
Fragaria vesca
gene13970-v1.0-hybrid
N
0.770
Ciclev10029019m.g
Citrus clementina
Ciclev10029019m.g
N
0.770
Thhalv10014524m.g
Eutrema salsugineum
Thhalv10014524m.g
I
0.770
ATMYB48
Arabidopsis thaliana
AT3G46130
I
0.770
orange1.1g023677m.g
Citrus sinensis
orange1.1g023677m.g
I
0.770
SapurV1A.0489s0220
Salix purpurea
SapurV1A.0489s0220
I
0.770
PK27824.1
Cannabis sativa
PK27824.1
N
0.770
SapurV1A.0040s0010
Salix purpurea
SapurV1A.0040s0010
I
0.770
MYB59
Arabidopsis thaliana
AT5G59780
D
0.770
Eucgr.J02073
Eucalyptus grandis
Eucgr.J02073
N
0.769
MYB21
Arabidopsis thaliana
AT3G27810
I
0.768
GRMZM2G001223
Zea mays
GRMZM2G001223
I
0.763
MTR_2g096380
Medicago truncatula
MTR_2g096380
I
0.759
OS01G0975300
Oryza sativa
OS01G0975300
N
0.759
Pavir.Fa00877
Panicum virgatum
Pavir.Fa00877
I
0.759
Sb08g018580
Sorghum bicolor
Sb08g018580
I
0.758
GRMZM2G130149
Zea mays
GRMZM2G130149
I
0.758
Traes_5DS_1EF547639
Triticum aestivum
Traes_5DS_1EF547639
N
0.758
OGLUM12G17720
Oryza glumaepatula
OGLUM12G17720
N
0.758
OBART12G16130
Oryza barthii
OBART12G16130
N
0.758
Traes_5BS_D1C03C165
Triticum aestivum
Traes_5BS_D1C03C165
N
0.758
Traes_5AS_7D519210E
Triticum aestivum
Traes_5AS_7D519210E
N
0.758
mgf009707m
Mimulus guttatus
mgf009707m
N
0.754
Cucsa.379880
Cucumis sativus
Cucsa.379880
I
0.753
PDK_20s1376841g001
Phoenix dactylifera
PDK_20s1376841g001
N
0.751
MLOC_17928
Hordeum vulgare
MLOC_17928
I
0.750
cassava11833.valid.m1
Manihot esculenta
cassava11833.valid.m1
N
0.749
Cagra.1390s0010
Capsella grandiflora
Cagra.1390s0010
I
0.748
SapurV1A.0263s0400
Salix purpurea
SapurV1A.0263s0400
I
0.747
BRADI4G09490
Brachypodium distachyon
BRADI4G09490
N
0.744
MDP0000475808
Malus domestica
MDP0000475808
N
0.744
POPTR_0006s23810
Populus trichocarpa
POPTR_0006s23810
I
0.744
MYB24
Arabidopsis thaliana
AT5G40350
D
0.743
Cucsa.061660
Cucumis sativus
Cucsa.061660
I
0.742
F775_22650
Aegilops tauschii
F775_22650
N
0.742
Cagra.2519s0060
Capsella grandiflora
Cagra.2519s0060
N
0.739
BGIOSGA037085
Oryza indica
BGIOSGA037085
N
0.737
Gorai.013G139200
Gossypium raimondii
Gorai.013G139200
I
0.737
PRUPE_ppa008906mg
Prunus persica
PRUPE_ppa008906mg
I
0.737
evm.TU.contig_33658
Carica papaya
evm.TU.contig_33658
N
0.737
TT2
Arabidopsis thaliana
AT5G35550
I
0.732
Eucgr.D02099
Eucalyptus grandis
Eucgr.D02099
N
0.732
GLYMA16G00920
Glycine max
GLYMA16G00920
I
0.731
mgf001247m
Mimulus guttatus
mgf001247m
N
0.728
Traes_5AS_D9A4C1AB0
Triticum aestivum
Traes_5AS_D9A4C1AB0
N
0.728
TCM_021433
Theobroma cacao
TCM_021433
I
0.728
Pavir.Ha00303
Panicum virgatum
Pavir.Ha00303
I
0.728
Si003873m.g
Setaria italica
Si003873m.g
N
0.727
MTR_7g111290
Medicago truncatula
MTR_7g111290
I
0.726
TRIUR3_32110
Triticum urartu
TRIUR3_32110
N
0.726
Pavir.J19088
Panicum virgatum
Pavir.J19088
N
0.723
evm.TU.supercontig_87.85
Carica papaya
evm.TU.supercontig_87.85
N
0.722
Ciclev10020307m.g
Citrus clementina
Ciclev10020307m.g
I
0.721
mgf021749m
Mimulus guttatus
mgf021749m
N
0.720
mgf018110m
Mimulus guttatus
mgf018110m
N
0.720
orange1.1g044587m.g
Citrus sinensis
orange1.1g044587m.g
N
0.719
Eucgr.B02401
Eucalyptus grandis
Eucgr.B02401
N
0.719
GRMZM2G032180
Zea mays
GRMZM2G032180
N
0.717
30147.m013749
Ricinus communis
30147.m013749
N
0.715
BRADI1G45510
Brachypodium distachyon
BRADI1G45510
I
0.714
PDK_20s1354851g002
Phoenix dactylifera
PDK_20s1354851g002
N
0.710
WER
Arabidopsis thaliana
AT5G14750
D
0.710
Bo5g131980
Brassica oleracea
Bo5g131980
N
0.709
ORGLA01G0040600
Oryza glaberrima
ORGLA01G0040600
N
0.708
MLOC_16981
Hordeum vulgare
MLOC_16981
I
0.708
Bra009910
Brassica rapa
Bra009910
N
0.708
Bo3g017760
Brassica oleracea
Bo3g017760
N
0.707
TRIUR3_12300
Triticum urartu
TRIUR3_12300
N
0.706
Pavir.Ia02093
Panicum virgatum
Pavir.Ia02093
N
0.706
MYB86
Arabidopsis thaliana
AT5G26660
I
0.705
Cagra.17198s0001
Capsella grandiflora
Cagra.17198s0001
N
0.705
Gorai.001G268000
Gossypium raimondii
Gorai.001G268000
I
0.704
Pavir.Ca00655
Panicum virgatum
Pavir.Ca00655
I
0.703
Pavir.Gb02200
Panicum virgatum
Pavir.Gb02200
I
0.703
Pavir.J36591
Panicum virgatum
Pavir.J36591
I
0.703
BGIOSGA002307
Oryza indica
BGIOSGA002307
N
0.703
LjSGA_148662.1
Lotus japonicus
LjSGA_148662.1
N
0.702
TCM_005371
Theobroma cacao
TCM_005371
I
0.702
SapurV1A.0177s0130
Salix purpurea
SapurV1A.0177s0130
I
0.701
PDK_20s1528141g001
Phoenix dactylifera
PDK_20s1528141g001
N
0.701
AtMYB10
Arabidopsis thaliana
AT3G12820
D
0.700
GRMZM2G305856
Zea mays
GRMZM2G305856
I
0.700
BGIOSGA013008
Oryza indica
BGIOSGA013008
N
0.699
SapurV1A.1387s0090
Salix purpurea
SapurV1A.1387s0090
I
0.697
GRMZM2G106558
Zea mays
GRMZM2G106558
I
0.697
Pavir.J24653
Panicum virgatum
Pavir.J24653
N
0.692
BGIOSGA027658
Oryza indica
BGIOSGA027658
N
0.691
Traes_3DL_75F8A05CF
Triticum aestivum
Traes_3DL_75F8A05CF
N
0.691
PDK_20s1316381g001
Phoenix dactylifera
PDK_20s1316381g001
N
0.690
MTR_6g055910
Medicago truncatula
MTR_6g055910
I
0.690
MDP0000153773
Malus domestica
MDP0000153773
N
0.689
mgf026560m
Mimulus guttatus
mgf026560m
N
0.688
SapurV1A.0093s0250
Salix purpurea
SapurV1A.0093s0250
I
0.687
Cagra.1655s0054
Capsella grandiflora
Cagra.1655s0054
N
0.687
MLOC_13019
Hordeum vulgare
MLOC_13019
I
0.687
F775_32151
Aegilops tauschii
F775_32151
N
0.687
Bo2g011790
Brassica oleracea
Bo2g011790
N
0.684
Gorai.008G192900
Gossypium raimondii
Gorai.008G192900
I
0.683
Bostr.3125s0001
Boechera stricta
Bostr.3125s0001
N
0.679
MYB114
Arabidopsis thaliana
AT1G66380
I
0.679
MYB94
Arabidopsis thaliana
AT3G47600
D
0.678
SapurV1A.0552s0030
Salix purpurea
SapurV1A.0552s0030
I
0.678
TCM_013983
Theobroma cacao
TCM_013983
I
0.678
PDK_20s1933711g001
Phoenix dactylifera
PDK_20s1933711g001
N
0.676
Eucgr.J00892
Eucalyptus grandis
Eucgr.J00892
N
0.675
MDP0000242612
Malus domestica
MDP0000242612
N
0.673
Al_scaffold_0002_1204
Arabidopsis lyrata
Al_scaffold_0002_1204
N
0.672
Bra031041
Brassica rapa
Bra031041
N
0.672
GLYMA08G44950
Glycine max
GLYMA08G44950
N
0.671
LjSGA_032074.1
Lotus japonicus
LjSGA_032074.1
N
0.671
mgf026463m
Mimulus guttatus
mgf026463m
N
0.671
BRADI2G11080
Brachypodium distachyon
BRADI2G11080
I
0.669
Traes_2DL_304E62CCE
Triticum aestivum
Traes_2DL_304E62CCE
N
0.666
VIT_02s0033g00460
Vitis vinifera
VIT_02s0033g00460
N
0.666
PDK_20s1415541g003
Phoenix dactylifera
PDK_20s1415541g003
N
0.665