Pavir.J19088 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J19088 T289398_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J19088.1.p Myb 1 15
Pavir.J19088.1.p Myb 21 66

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_013983 Theobroma cacao TCM_013983 I 0.830
Gorai.008G192900 Gossypium raimondii Gorai.008G192900 I 0.827
SapurV1A.0552s0030 Salix purpurea SapurV1A.0552s0030 I 0.825
PDK_20s1338951g004 Phoenix dactylifera PDK_20s1338951g004 N 0.819
MYB94 Arabidopsis thaliana AT3G47600 D 0.810
Cagra.17198s0001 Capsella grandiflora Cagra.17198s0001 N 0.747
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.737
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N 0.734
MDP0000169874 Malus domestica MDP0000169874 N 0.732
MDP0000139931 Malus domestica MDP0000139931 N 0.732
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.724
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N 0.723
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.722
mgf026463m Mimulus guttatus mgf026463m N 0.721
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.721
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.717
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.717
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.715
Pavir.J23620 Panicum virgatum Pavir.J23620 N 0.713
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.712
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.712
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.712
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N 0.711
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.708
Si003873m.g Setaria italica Si003873m.g N 0.707
mgf018110m Mimulus guttatus mgf018110m N 0.706
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.705
MYB21 Arabidopsis thaliana AT3G27810 I 0.705
MDP0000475808 Malus domestica MDP0000475808 N 0.704
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.703
PDK_20s1415541g003 Phoenix dactylifera PDK_20s1415541g003 N 0.702
WER Arabidopsis thaliana AT5G14750 D 0.701
30147.m013749 Ricinus communis 30147.m013749 N 0.700
TT2 Arabidopsis thaliana AT5G35550 I 0.698
mgf021749m Mimulus guttatus mgf021749m N 0.696
Traes_2AL_E8C400686 Triticum aestivum Traes_2AL_E8C400686 N 0.696
Cagra.1655s0054 Capsella grandiflora Cagra.1655s0054 N 0.696
MYB27 Arabidopsis thaliana AT3G53200 D 0.695
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.695
Cagra.2519s0060 Capsella grandiflora Cagra.2519s0060 N 0.694
Traes_2BL_DAA2104F5 Triticum aestivum Traes_2BL_DAA2104F5 N 0.692
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.692
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.691
Al_scaffold_0002_1204 Arabidopsis lyrata Al_scaffold_0002_1204 N 0.689
Bo5g131980 Brassica oleracea Bo5g131980 N 0.687
TCM_005371 Theobroma cacao TCM_005371 I 0.687
GLYMA16G00920 Glycine max GLYMA16G00920 I 0.686
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N 0.686
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.684
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.684
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.684
MYB24 Arabidopsis thaliana AT5G40350 D 0.684
F775_22650 Aegilops tauschii F775_22650 N 0.684
MYB114 Arabidopsis thaliana AT1G66380 I 0.683
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.683
BGIOSGA013008 Oryza indica BGIOSGA013008 N 0.683
Bostr.3125s0001 Boechera stricta Bostr.3125s0001 N 0.683
GRMZM2G032180 Zea mays GRMZM2G032180 N 0.682
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.680
GLYMA08G44950 Glycine max GLYMA08G44950 N 0.679
Cucsa.089670 Cucumis sativus Cucsa.089670 N 0.679
PDK_20s1675721g001 Phoenix dactylifera PDK_20s1675721g001 N 0.679
TCM_021433 Theobroma cacao TCM_021433 I 0.678
MDP0000153773 Malus domestica MDP0000153773 N 0.678
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.678
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.677
mgf024109m Mimulus guttatus mgf024109m N 0.677
Bra031041 Brassica rapa Bra031041 N 0.677
PDK_20s1316381g001 Phoenix dactylifera PDK_20s1316381g001 N 0.676
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.674
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.674
Gorai.013G118300 Gossypium raimondii Gorai.013G118300 I 0.674
OBART12G16130 Oryza barthii OBART12G16130 N 0.674
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N 0.674
Pm005451 Prunus mume Pm005451 N 0.674
TRIUR3_32110 Triticum urartu TRIUR3_32110 N 0.673
BGIOSGA002307 Oryza indica BGIOSGA002307 N 0.673
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.672
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N 0.672
LjSGA_067208.1 Lotus japonicus LjSGA_067208.1 N 0.671
OS01G0975300 Oryza sativa OS01G0975300 N 0.670
MDP0000244980 Malus domestica MDP0000244980 N 0.670
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N 0.670
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N 0.670
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N 0.670
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.670
Pm029438 Prunus mume Pm029438 N 0.669
Pavir.Ia02093 Panicum virgatum Pavir.Ia02093 N 0.668
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.666
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.666
TRIUR3_12300 Triticum urartu TRIUR3_12300 N 0.666
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N 0.666
PK27824.1 Cannabis sativa PK27824.1 N 0.666
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.665
MDP0000470422 Malus domestica MDP0000470422 N 0.665
OLONG_004747 Oryza longistaminata OLONG_004747 N 0.664
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.664
MDP0000242612 Malus domestica MDP0000242612 N 0.663
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.663
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.661
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N 0.661
MYB59 Arabidopsis thaliana AT5G59780 D 0.661
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N 0.661
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.661
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.661
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.661
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.661
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N 0.661
Pavir.J27570 Panicum virgatum Pavir.J27570 I 0.611
Pavir.J27229 Panicum virgatum Pavir.J27229 I 0.611
Sb05g001730 Sorghum bicolor Sb05g001730 I 0.611
Si026651m.g Setaria italica Si026651m.g I 0.611
Sb08g001800 Sorghum bicolor Sb08g001800 I 0.611
Si010608m.g Setaria italica Si010608m.g I 0.611