Pavir.Ga01101 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ga01101 T289213_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC

GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.666 0.753
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH

DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.663 0.731
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH

DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.663 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01101.1.p Myb 90 137
Pavir.Ga01101.1.p Myb 143 188

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Smad4 Mus musculus ENSMUSG00000024515 D 0.000
Med Drosophila melanogaster FBgn0011655 D 0.000
SMAD4 Homo sapiens ENSG00000141646 D 0.000
NEMVEDRAFT_v1g18576 Nematostella vectensis NEMVEDRAFT_v1g18576 I 0.000
NEMVEDRAFT_v1g248037 Nematostella vectensis NEMVEDRAFT_v1g248037 I 0.000
L798_13939 Zootermopsis nevadensis L798_13939 I 0.000
ISCW018468 Ixodes scapularis ISCW018468 I 0.000
PHUM002670 Pediculus humanus PHUM002670 I 0.000
RPRC010188 Rhodnius prolixus RPRC010188 I 0.000
Myotis_brandtii_Smad4_10005924 Myotis brandtii Myotis_brandtii_Smad4_10005924 I 0.000
SMAD4 Tetraodon nigroviridis ENSTNIG00000009050 I 0.000
SMAR013850 Strigamia maritima SMAR013850 I 0.000
SPU_004287 Strongylocentrotus purpuratus SPU_004287 I 0.000
TC010848 Tribolium castaneum TC010848 I 0.000
YQE_06624 Dendroctonus ponderosae YQE_06624 I 0.000
YQE_08737 Dendroctonus ponderosae YQE_08737 I 0.000
Aan_R014474 Calypte anna Aan_R014474 I 0.000
HelroG88197 Helobdella robusta HelroG88197 I 0.000
HelroG76435 Helobdella robusta HelroG76435 I 0.000
si:dkey-222b8.1 Takifugu rubripes ENSTRUG00000004163 I 0.000
SMAD4 Takifugu rubripes ENSTRUG00000014045 I 0.000
ENSTSYG00000009792 Tarsius syrichta ENSTSYG00000009792 I 0.000
SMAD4 Vicugna pacos ENSVPAG00000006757 I 0.000
ENSXMAG00000005051 Xiphophorus maculatus ENSXMAG00000005051 I 0.000
GA14643 Drosophila pseudoobscura FBgn0074670 I 0.000
GF22974 Drosophila ananassae FBgn0099968 I 0.000
GG11819 Drosophila erecta FBgn0104114 I 0.000
GH18642 Drosophila grimshawi FBgn0126109 I 0.000
GI23400 Drosophila mojavensis FBgn0146126 I 0.000
GL23637 Drosophila persimilis FBgn0161227 I 0.000
GM16436 Drosophila sechellia FBgn0171351 I 0.000
GJ23092 Drosophila virilis FBgn0210194 I 0.000
GK11724 Drosophila willistoni FBgn0213735 I 0.000
GE10952 Drosophila yakuba FBgn0228782 I 0.000
Afo_R008709 Aptenodytes forsteri Afo_R008709 I 0.000
Alligator_sinensis_CCG008910.1 Alligator sinensis Alligator_sinensis_CCG008910.1 I 0.000
LDEC015949 Leptinotarsa decemlineata LDEC015949 I 0.000
Sjc_0030450 Schistosoma japonicum Sjc_0030450 I 0.000
SMU15015494 Schmidtea mediterranea SMU15015494 I 0.000
smad4.1 Xenopus tropicalis XB-GENE-485691 I 0.000
smad4.2.S Xenopus laevis XB-GENE-5995204 I 0.000
smad4.2.L Xenopus laevis XB-GENE-6256010 I 0.000
smad4.1.L Xenopus laevis XB-GENE-865543 I 0.000
AALB009485 Anopheles albimanus AALB009485 I 0.000
BGLB014287 Biomphalaria glabrata BGLB014287 I 0.000
LLOJ008806 Lutzomyia longipalpis LLOJ008806 I 0.000
MDOA012885 Musca domestica MDOA012885 I 0.000
PPAI002168 Phlebotomus papatasi PPAI002168 I 0.000
D918_00298 Trichuris suis D918_00298 I 0.000
TRE_0001987301 Trichobilharzia regenti TRE_0001987301 I 0.000
LCUP007928 Lucilia cuprina LCUP007928 I 0.000
HHAL000394-PA Halyomorpha halys HHAL000394-PA I 0.000
HHAL000393-PA Halyomorpha halys HHAL000393-PA I 0.000
Brh_R010414 Buceros rhinoceros Brh_R010414 I 0.000
Cmyd_10005540 Chelonia mydas Cmyd_10005540 I 0.000
ENSP00000341551-D1 Bos grunniens ENSP00000341551-D1 I 0.000
ENSP00000381452 Macaca fascicularis ENSP00000381452 I 0.000
Gfo_R011803 Geospiza fortis Gfo_R011803 I 0.000
Gfo_R016223 Geospiza fortis Gfo_R016223 I 0.000
Ogr06720 Ophisaurus gracilis Ogr06720 I 0.000
Ogr14199 Ophisaurus gracilis Ogr14199 I 0.000
Pvit_01119 Pogona vitticeps Pvit_01119 I 0.000
fgenesh2_pg.scaffold_230000050 Branchiostoma floridae fgenesh2_pg.scaffold_230000050 I 0.000
Ocbimv22032358m.g Octopus bimaculoides Ocbimv22032358m.g I 0.000
Sakowv30001112m.g Saccoglossus kowalevskii Sakowv30001112m.g I 0.000
AAH84196 Xenopus laevis AAH84196 I 0.000
CLEC002594 Cimex lectularius CLEC002594 I 0.000
TTRE_0000855901 Trichuris trichiura TTRE_0000855901 I 0.000
AAEL013896 Aedes aegypti AAEL013896 I 0.000
SMAD4 Callithrix jacchus ENSCJAG00000001910 I 0.000
SMAD4 Cavia porcellus ENSCPOG00000006470 I 0.000
ENSCSAG00000018094 Chlorocebus sabaeus ENSCSAG00000018094 I 0.000
ENSCSAVG00000006480 Ciona savignyi ENSCSAVG00000006480 I 0.000
SMAD4 Danio rerio ENSDARG00000012649 I 0.000
si:dkey-222b8.1 Danio rerio ENSDARG00000045094 I 0.000
SMAD4 Dasypus novemcinctus ENSDNOG00000005063 I 0.000
Smad4 Dipodomys ordii ENSDORG00000009089 I 0.000
SMAD4 Equus caballus ENSECAG00000017857 I 0.000
SMAD4 Echinops telfairi ENSETEG00000007750 I 0.000
SMAD4 Felis catus ENSFCAG00000005257 I 0.000
si:dkey-222b8.1 Gasterosteus aculeatus ENSGACG00000000538 I 0.000
ENSGACG00000016858 Gasterosteus aculeatus ENSGACG00000016858 I 0.000
SMAD4 Gorilla gorilla ENSGGOG00000013662 I 0.000
smad4 Ciona intestinalis ENSCING00000005559 I 0.000
SMAD4 Choloepus hoffmanni ENSCHOG00000000860 I 0.000
SMAD4 Canis familiaris ENSCAFG00000000164 I 0.000
ACYPI000365 Acyrthosiphon pisum ACYPI000365 I 0.000
ACYPI003759 Acyrthosiphon pisum ACYPI003759 I 0.000
ACYPI005550 Acyrthosiphon pisum ACYPI005550 I 0.000
ADAC007516 Anopheles darlingi ADAC007516 I 0.000
Aqu1.215833 Amphimedon queenslandica Aqu1.215833 I 0.000
Aqu1.215834 Amphimedon queenslandica Aqu1.215834 I 0.000
CapteG179368 Capitella teleta CapteG179368 I 0.000
CGI_10000594 Crassostrea gigas CGI_10000594 I 0.000
SMAD4 Anolis carolinensis ENSACAG00000010186 I 0.000
ENSAMEG00000002899 Ailuropoda melanoleuca ENSAMEG00000002899 I 0.000
ENSAMXG00000017275 Astyanax mexicanus ENSAMXG00000017275 I 0.000
ENSAMXG00000018339 Astyanax mexicanus ENSAMXG00000018339 I 0.000
ENSAPLG00000003924 Anas platyrhynchos ENSAPLG00000003924 I 0.000
SMAD4 Bos taurus ENSBTAG00000006919 I 0.000
ENSGMOG00000013964 Gadus morhua ENSGMOG00000013964 I 0.000
SMAD4 Loxodonta africana ENSLAFG00000012595 I 0.000
si:dkey-222b8.1 Tetraodon nigroviridis ENSTNIG00000005007 I 0.000
SMAD4 Oryzias latipes ENSORLG00000007703 I 0.000
ENSPANG00000024703 Papio anubis ENSPANG00000024703 I 0.000
ENSPFOG00000019807 Poecilia formosa ENSPFOG00000019807 I 0.000
ENSPMAG00000008404 Petromyzon marinus ENSPMAG00000008404 I 0.000
ENSPMAG00000009414 Petromyzon marinus ENSPMAG00000009414 I 0.000
ENSPPYG00000009165 Pongo abelii ENSPPYG00000009165 I 0.000
ENSPSIG00000014614 Pelodiscus sinensis ENSPSIG00000014614 I 0.000
SMAD4 Pan troglodytes ENSPTRG00000010028 I 0.000
SMAD4 Pteropus vampyrus ENSPVAG00000004261 I 0.000
Smad4 Rattus norvegicus ENSRNOG00000051965 I 0.000
ENSSHAG00000010344 Sarcophilus harrisii ENSSHAG00000010344 I 0.000
SMAD4 Sus scrofa ENSSSCG00000004524 I 0.000
ENSSTOG00000028580 Ictidomys tridecemlineatus ENSSTOG00000028580 I 0.000
SMAD4 Tupaia belangeri ENSTBEG00000014105 I 0.000
SMAD4 Ochotona princeps ENSOPRG00000013601 I 0.000
ENSONIG00000015035 Oreochromis niloticus ENSONIG00000015035 I 0.000
ENSMEUG00000001823 Macropus eugenii ENSMEUG00000001823 I 0.000
SMAD4 Microcebus murinus ENSMICG00000017525 I 0.000
SMAD4 Myotis lucifugus ENSMLUG00000013944 I 0.000
SMAD4 Macaca mulatta ENSMMUG00000018334 I 0.000
SMAD4 Monodelphis domestica ENSMODG00000010995 I 0.000
ENSMPUG00000008776 Mustela putorius furo ENSMPUG00000008776 I 0.000
ENSNLEG00000011859 Nomascus leucogenys ENSNLEG00000011859 I 0.000
SMAD4 Ornithorhynchus anatinus ENSOANG00000008117 I 0.000
ENSOANG00000030959 Ornithorhynchus anatinus ENSOANG00000030959 I 0.000
ENSOARG00000004662 Ovis aries ENSOARG00000004662 I 0.000
SMAD4 Oryctolagus cuniculus ENSOCUG00000003929 I 0.000
SMAD4 Otolemur garnettii ENSOGAG00000012081 I 0.000
ENSONIG00000001557 Oreochromis niloticus ENSONIG00000001557 I 0.000
ENSONIG00000014036 Oreochromis niloticus ENSONIG00000014036 I 0.000
ENSXMAG00000000346 Xiphophorus maculatus ENSXMAG00000000346 N 0.000
ENSLOCG00000006749 Lepisosteus oculatus ENSLOCG00000006749 N 0.000