Pavir.Gb00812 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Gb00812 T289227_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.677 0.785
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.677 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00812.1.p Myb 15 64
Pavir.Gb00812.1.p Myb 70 115

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Afo_R013971 Aptenodytes forsteri Afo_R013971 N 0.000
Brh_R009385 Buceros rhinoceros Brh_R009385 N 0.000
Aan_R015481 Calypte anna Aan_R015481 N 0.000
ENSFALG00000000602 Ficedula albicollis ENSFALG00000000602 N 0.000
Gfo_R011645 Geospiza fortis Gfo_R011645 N 0.000
Gfo_R000133 Geospiza fortis Gfo_R000133 N 0.000
ENSLOCG00000001837 Lepisosteus oculatus ENSLOCG00000001837 N 0.000
ENSLOCG00000000353 Lepisosteus oculatus ENSLOCG00000000353 N 0.000
ENSORLG00000017455 Oryzias latipes ENSORLG00000017455 N 0.000
ENSTGUG00000018465 Taeniopygia guttata ENSTGUG00000018465 N 0.000
Tal_R000255 Tyto alba Tal_R000255 N 0.000
A1L2U9 Xenopus laevis A1L2U9 N 0.000
zbtb8a.1.S Xenopus laevis XB-GENE-6255849 N 0.000
zbtb8a.1 Xenopus tropicalis XB-GENE-494386 N 0.000