Pavir.J34972 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J34972 T289460_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.662 0.699
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.661 0.699
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.661 0.699
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.661 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J34972.1.p Myb 14 61
Pavir.J34972.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.317.17.1 Physcomitrella patens e_gw1.317.17.1 I 0.721
SapurV1A.0555s0160 Salix purpurea SapurV1A.0555s0160 I 0.703
POPTR_0001s02240 Populus trichocarpa POPTR_0001s02240 I 0.703
GSMUA_Achr5G18080_001 Musa acuminata GSMUA_Achr5G18080_001 I 0.699
POPTR_0003s09300 Populus trichocarpa POPTR_0003s09300 I 0.699
PRUPE_ppa019280mg Prunus persica PRUPE_ppa019280mg I 0.698
Bostr.29827s0161 Boechera stricta Bostr.29827s0161 I 0.691
Bra036588 Brassica rapa Bra036588 I 0.691
Bo9g010860 Brassica oleracea Bo9g010860 I 0.691
ATMYB86 Arabidopsis lyrata fgenesh2_kg.6__2630__AT5G26660.1 I 0.691
Bo2g156300 Brassica oleracea Bo2g156300 I 0.691
Thhalv10004450m.g Eutrema salsugineum Thhalv10004450m.g I 0.691
Carubv10001224m.g Capsella rubella Carubv10001224m.g I 0.691
Cagra.23492s0001 Capsella grandiflora Cagra.23492s0001 I 0.691
MYB86 Arabidopsis thaliana AT5G26660 I 0.691
Bo7g095130 Brassica oleracea Bo7g095130 I 0.691
cassava44907.m1 Manihot esculenta cassava44907.m1 I 0.690
gene02214-v1.0-hybrid Fragaria vesca gene02214-v1.0-hybrid I 0.689
VIT_05s0020g01100 Vitis vinifera VIT_05s0020g01100 I 0.687
AMTR_s00038p00183620 Amborella trichopoda AMTR_s00038p00183620 I 0.686
MDP0000286526 Malus domestica MDP0000286526 I 0.686
mgf024114m Mimulus guttatus mgf024114m I 0.686
Cagra.10702s0006 Capsella grandiflora Cagra.10702s0006 I 0.685
AtMYB50 Arabidopsis thaliana AT1G57560 I 0.685
AtMYB50 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003728 I 0.685
Carubv10020714m.g Capsella rubella Carubv10020714m.g I 0.685
SapurV1A.0151s0280 Salix purpurea SapurV1A.0151s0280 I 0.682
MYB49 Vitis vinifera VIT_19s0014g03820 I 0.681
Bostr.30057s0004 Boechera stricta Bostr.30057s0004 I 0.681
gw1.106.41.1 Physcomitrella patens gw1.106.41.1 I 0.680
Eucgr.K00077 Eucalyptus grandis Eucgr.K00077 I 0.679
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.678
OB06G17320 Oryza brachyantha OB06G17320 I 0.678
OGLUM08G19650 Oryza glumaepatula OGLUM08G19650 I 0.677
OMERI08G14710 Oryza meridionalis OMERI08G14710 I 0.677
ORUFI08G20890 Oryza rufipogon ORUFI08G20890 I 0.677
ONIVA08G20680 Oryza nivara ONIVA08G20680 I 0.677
OB08G25790 Oryza brachyantha OB08G25790 I 0.677
Aquca_034_00423 Aquilegia coerulea Aquca_034_00423 I 0.677
Ciclev10003251m.g Citrus clementina Ciclev10003251m.g I 0.677
ORGLA08G0162300 Oryza glaberrima ORGLA08G0162300 I 0.677
PK14287.1 Cannabis sativa PK14287.1 I 0.676
POPTR_0011s12750 Populus trichocarpa POPTR_0011s12750 I 0.675
ORUFI06G07920 Oryza rufipogon ORUFI06G07920 I 0.674
OS06G0221000 Oryza sativa OS06G0221000 I 0.674
Traes_7BS_7E91DE546 Triticum aestivum Traes_7BS_7E91DE546 I 0.674
Pavir.Fb01820 Panicum virgatum Pavir.Fb01820 I 0.674
Traes_7DS_469ED3135 Triticum aestivum Traes_7DS_469ED3135 I 0.674
OBART06G07710 Oryza barthii OBART06G07710 I 0.674
F775_06136 Aegilops tauschii F775_06136 I 0.674
GSMUA_AchrUn_randomG21080_001 Musa acuminata GSMUA_AchrUn_randomG21080_001 I 0.674
ONIVA06G08940 Oryza nivara ONIVA06G08940 I 0.674
OGLUM06G08200 Oryza glumaepatula OGLUM06G08200 I 0.674
ORGLA06G0073000 Oryza glaberrima ORGLA06G0073000 I 0.674
chr2.CM0124.80.nc Lotus japonicus chr2.CM0124.80.nc I 0.673
gene16287-v1.0-hybrid Fragaria vesca gene16287-v1.0-hybrid I 0.673
TCM_001102 Theobroma cacao TCM_001102 I 0.673
Pm002011 Prunus mume Pm002011 I 0.673
PRUPE_ppa019923mg Prunus persica PRUPE_ppa019923mg I 0.673
evm.TU.supercontig_752.1 Carica papaya evm.TU.supercontig_752.1 I 0.673
Gorai.007G236800 Gossypium raimondii Gorai.007G236800 I 0.673
MDP0000320772 Malus domestica MDP0000320772 I 0.673
Pm019588 Prunus mume Pm019588 I 0.672
PRUPE_ppa017039mg Prunus persica PRUPE_ppa017039mg I 0.672
cassava12868.valid.m1 Manihot esculenta cassava12868.valid.m1 I 0.671
Bra020526 Brassica rapa Bra020526 I 0.671
SapurV1A.0495s0050 Salix purpurea SapurV1A.0495s0050 I 0.671
SapurV1A.4146s0010 Salix purpurea SapurV1A.4146s0010 I 0.671
TCM_026853 Theobroma cacao TCM_026853 I 0.671
MTR_5g029840 Medicago truncatula MTR_5g029840 I 0.670
GSMUA_Achr4G29410_001 Musa acuminata GSMUA_Achr4G29410_001 I 0.670
SapurV1A.0403s0220 Salix purpurea SapurV1A.0403s0220 I 0.669
Solyc01g087130.2 Solanum lycopersicum Solyc01g087130.2 I 0.669
Ciclev10026023m.g Citrus clementina Ciclev10026023m.g I 0.669
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I 0.669
ONIVA05G29400 Oryza nivara ONIVA05G29400 I 0.669
SapurV1A.2488s0010 Salix purpurea SapurV1A.2488s0010 I 0.669
ORGLA12G0120900 Oryza glaberrima ORGLA12G0120900 I 0.669
orange1.1g045434m.g Citrus sinensis orange1.1g045434m.g I 0.669
Si024786m.g Setaria italica Si024786m.g I 0.669
Pavir.Ca02370 Panicum virgatum Pavir.Ca02370 I 0.669
POPTR_0005s07590 Populus trichocarpa POPTR_0005s07590 I 0.669
MDP0000302984 Malus domestica MDP0000302984 I 0.669
OMERI12G09660 Oryza meridionalis OMERI12G09660 I 0.669
MDP0000228252 Malus domestica MDP0000228252 I 0.669
Gorai.009G281000 Gossypium raimondii Gorai.009G281000 I 0.669
Gorai.002G077200 Gossypium raimondii Gorai.002G077200 I 0.669
OGLUM12G15400 Oryza glumaepatula OGLUM12G15400 I 0.669
ORUFI12G15040 Oryza rufipogon ORUFI12G15040 I 0.669
BGIOSGA036092 Oryza indica BGIOSGA036092 I 0.669
OBART12G13720 Oryza barthii OBART12G13720 I 0.669
TCM_034902 Theobroma cacao TCM_034902 I 0.669
OPUNC12G12380 Oryza punctata OPUNC12G12380 I 0.669
estExt_gwp_gw1.C_20043 Physcomitrella patens estExt_gwp_gw1.C_20043 I 0.669
Pm023191 Prunus mume Pm023191 I 0.668
GSMUA_Achr2G02970_001 Musa acuminata GSMUA_Achr2G02970_001 I 0.668
Thhalv10023601m.g Eutrema salsugineum Thhalv10023601m.g I 0.668
AMTR_s00003p00271440 Amborella trichopoda AMTR_s00003p00271440 I 0.666
Gorai.009G236900 Gossypium raimondii Gorai.009G236900 I 0.665
GLYMA15G02955 Glycine max GLYMA15G02955 I 0.664
VIT_07s0141g00100 Vitis vinifera VIT_07s0141g00100 I 0.664
MYB39 Vitis vinifera VIT_02s0012g01650 I 0.663
cassava3811.m1 Manihot esculenta cassava3811.m1 I 0.663
VIT_16s0039g01710 Vitis vinifera VIT_16s0039g01710 I 0.663
ATY53 Arabidopsis lyrata scaffold_301452.1 I 0.662
e_gw1.106.133.1 Physcomitrella patens e_gw1.106.133.1 I 0.662
Bostr.3640s0047 Boechera stricta Bostr.3640s0047 I 0.662
ATY53 Arabidopsis thaliana AT3G12720 D 0.662
Thhalv10022066m.g Eutrema salsugineum Thhalv10022066m.g I 0.662
e_gw1.326.5.1 Physcomitrella patens e_gw1.326.5.1 I 0.662
AtMYB93 Vitis vinifera VIT_18s0001g05670 I 0.662
Cagra.5641s0037 Capsella grandiflora Cagra.5641s0037 I 0.662
Carubv10015099m.g Capsella rubella Carubv10015099m.g I 0.662
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.662
Eucgr.F01069 Eucalyptus grandis Eucgr.F01069 I 0.662
Bo1g138990 Brassica oleracea Bo1g138990 I 0.662
Bra039339 Brassica rapa Bra039339 I 0.662
Thhalv10028778m.g Eutrema salsugineum Thhalv10028778m.g I 0.661
MYB55 Arabidopsis thaliana AT4G01680 D 0.661
Bo9g004210 Brassica oleracea Bo9g004210 I 0.661
chr1.CM0206.990.nd Lotus japonicus chr1.CM0206.990.nd I 0.661
MYB55 Arabidopsis lyrata fgenesh2_kg.6__3543__AT4G01680.1 I 0.661
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.661
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.661
cassava17679.valid.m1 Manihot esculenta cassava17679.valid.m1 I 0.661
Ca_03589 Cicer arietinum Ca_03589 I 0.661
MTR_8g017540 Medicago truncatula MTR_8g017540 I 0.661
Ca_01072 Cicer arietinum Ca_01072 I 0.661
MTR_1g085040 Medicago truncatula MTR_1g085040 I 0.661
LPERR06G07150 Leersia perrieri LPERR06G07150 I 0.661
Carubv10001308m.g Capsella rubella Carubv10001308m.g I 0.661
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.661
GLYMA19G41250 Glycine max GLYMA19G41250 I 0.661
Cagra.0334s0011 Capsella grandiflora Cagra.0334s0011 I 0.661
Solyc08g076700.1 Solanum lycopersicum Solyc08g076700.1 I 0.661
Bostr.4825s0008 Boechera stricta Bostr.4825s0008 I 0.661
Bra036317 Brassica rapa Bra036317 I 0.661