Bra004403 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra004403 T292533_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
JUB1
M07191_2.00 		Arabidopsis thaliana
YKCCGTNNNNNHNMCGBHRY
RYDVCGKNDNNNNNACGGMR		 Dap-seq
OMalley et al.(2016)
ANAC042_col_a 		0.895 0.693
ANAC094
M07236_2.00 		Arabidopsis thaliana
YDCCGTNNNNNHNACGBH
DVCGTNDNNNNNACGGHR		 Dap-seq
OMalley et al.(2016)
ANAC094_col_a 		0.889 0.816
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004403.1-P NAC/NAM 6 145

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g109250 Brassica oleracea Bo6g109250 I 0.970
Thhalv10019631m.g Eutrema salsugineum Thhalv10019631m.g I 0.970
Bostr.12659s0312 Boechera stricta Bostr.12659s0312 I 0.961
Carubv10011253m.g Capsella rubella Carubv10011253m.g I 0.960
Thhalv10007709m.g Eutrema salsugineum Thhalv10007709m.g I 0.960
FEZ Arabidopsis thaliana AT1G26870 I 0.960
Carubv10021514m.g Capsella rubella Carubv10021514m.g I 0.960
Cagra.1150s0013 Capsella grandiflora Cagra.1150s0013 I 0.960
FEZ Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002274 I 0.959
Bo5g045190 Brassica oleracea Bo5g045190 I 0.958
Bra024677 Brassica rapa Bra024677 I 0.958
Cagra.8367s0003 Capsella grandiflora Cagra.8367s0003 I 0.956
GSMUA_Achr6G02680_001 Musa acuminata GSMUA_Achr6G02680_001 I 0.952
Lus10015367.g Linum usitatissimum Lus10015367.g I 0.951
Lus10007263.g Linum usitatissimum Lus10007263.g I 0.950
Gorai.005G141200 Gossypium raimondii Gorai.005G141200 I 0.949
orange1.1g015827m.g Citrus sinensis orange1.1g015827m.g I 0.949
LjT46I09.50.nd Lotus japonicus LjT46I09.50.nd I 0.949
evm.TU.supercontig_128.20 Carica papaya evm.TU.supercontig_128.20 I 0.949
mgf025649m Mimulus guttatus mgf025649m I 0.949
Ciclev10031623m.g Citrus clementina Ciclev10031623m.g I 0.949
29813.m001479 Ricinus communis 29813.m001479 I 0.949
cassava38350.m1 Manihot esculenta cassava38350.m1 I 0.949
Aquca_002_00586 Aquilegia coerulea Aquca_002_00586 I 0.949
MTR_5g040420 Medicago truncatula MTR_5g040420 I 0.948
GLYMA18G15020 Glycine max GLYMA18G15020 I 0.948
PGSC0003DMG400031266 Solanum tuberosum PGSC0003DMG400031266 I 0.948
GLYMA08G41260 Glycine max GLYMA08G41260 I 0.948
Solyc05g007550.1 Solanum lycopersicum Solyc05g007550.1 I 0.947
orange1.1g047852m.g Citrus sinensis orange1.1g047852m.g I 0.947
Aquca_006_00295 Aquilegia coerulea Aquca_006_00295 I 0.947
TCM_018508 Theobroma cacao TCM_018508 I 0.947
Eucgr.G02506 Eucalyptus grandis Eucgr.G02506 I 0.947
GRMZM2G152543 Zea mays GRMZM2G152543 I 0.947
gene03833-v1.0-hybrid Fragaria vesca gene03833-v1.0-hybrid I 0.946
GLYMA01G05680 Glycine max GLYMA01G05680 I 0.946
TRIUR3_01901 Triticum urartu TRIUR3_01901 I 0.946
Traes_5DL_0713E8429 Triticum aestivum Traes_5DL_0713E8429 I 0.946
Traes_5AL_F35B9FF8E Triticum aestivum Traes_5AL_F35B9FF8E I 0.946
Pm015876 Prunus mume Pm015876 I 0.946
Ca_26322 Cicer arietinum Ca_26322 I 0.946
Ca_18749 Cicer arietinum Ca_18749 I 0.946
VIT_01s0026g02360 Vitis vinifera VIT_01s0026g02360 I 0.946
29032.m000021 Ricinus communis 29032.m000021 I 0.946
Traes_5BL_38DFDFE41 Triticum aestivum Traes_5BL_38DFDFE41 I 0.946
GLYMA02G11900 Glycine max GLYMA02G11900 I 0.946
BRADI4G30177 Brachypodium distachyon BRADI4G30177 I 0.946
OLONG_016322 Oryza longistaminata OLONG_016322 I 0.945
Sb04g028015 Sorghum bicolor Sb04g028015 I 0.945
ONIVA06G04660 Oryza nivara ONIVA06G04660 I 0.945
OPUNC02G29910 Oryza punctata OPUNC02G29910 I 0.945
Eucgr.I01940 Eucalyptus grandis Eucgr.I01940 I 0.945
ORGLA02G0278900 Oryza glaberrima ORGLA02G0278900 I 0.945
PRUPE_ppa016710mg Prunus persica PRUPE_ppa016710mg I 0.945
OS02G0745250 Oryza sativa OS02G0745250 I 0.945
Si032144m.g Setaria italica Si032144m.g I 0.945
ORUFI02G34050 Oryza rufipogon ORUFI02G34050 I 0.945
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.945
Si019308m.g Setaria italica Si019308m.g I 0.945
OMERI02G31030 Oryza meridionalis OMERI02G31030 I 0.945
Pavir.Ab02998 Panicum virgatum Pavir.Ab02998 I 0.945
GRMZM2G100593 Zea mays GRMZM2G100593 I 0.945
LPERR02G26510 Leersia perrieri LPERR02G26510 I 0.945
Lus10036749.g Linum usitatissimum Lus10036749.g I 0.945
Lus10037178.g Linum usitatissimum Lus10037178.g I 0.945
Pavir.Bb02181 Panicum virgatum Pavir.Bb02181 I 0.945
Pavir.Aa00706 Panicum virgatum Pavir.Aa00706 I 0.945
OB02G39340 Oryza brachyantha OB02G39340 I 0.945
BGIOSGA009044 Oryza indica BGIOSGA009044 I 0.945
OGLUM02G33000 Oryza glumaepatula OGLUM02G33000 I 0.945
OBART02G32360 Oryza barthii OBART02G32360 I 0.945
PGSC0003DMG400001323 Solanum tuberosum PGSC0003DMG400001323 I 0.944
Bo8g076410 Brassica oleracea Bo8g076410 I 0.944
GRMZM2G159094 Zea mays GRMZM2G159094 I 0.944
Gorai.006G017700 Gossypium raimondii Gorai.006G017700 I 0.944
Pavir.Fa00893 Panicum virgatum Pavir.Fa00893 I 0.944
MTR_8g467490 Medicago truncatula MTR_8g467490 I 0.944
Solyc02g087920.2 Solanum lycopersicum Solyc02g087920.2 I 0.944
Si015514m.g Setaria italica Si015514m.g I 0.944
Pavir.J08304 Panicum virgatum Pavir.J08304 I 0.944
BGIOSGA028728 Oryza indica BGIOSGA028728 I 0.943
OGLUM08G16650 Oryza glumaepatula OGLUM08G16650 I 0.943
OMERI08G13180 Oryza meridionalis OMERI08G13180 I 0.943
OPUNC08G13940 Oryza punctata OPUNC08G13940 I 0.943
OBART08G15880 Oryza barthii OBART08G15880 I 0.943
ORUFI08G17800 Oryza rufipogon ORUFI08G17800 I 0.943
OB08G23420 Oryza brachyantha OB08G23420 I 0.943
OS08G0436700 Oryza sativa OS08G0436700 I 0.943
LPERR08G13170 Leersia perrieri LPERR08G13170 I 0.943
ONIVA08G17120 Oryza nivara ONIVA08G17120 I 0.943
Traes_6BL_A169A3ECB Triticum aestivum Traes_6BL_A169A3ECB I 0.942
BRADI3G59380 Brachypodium distachyon BRADI3G59380 I 0.942
cassava45330.m1 Manihot esculenta cassava45330.m1 I 0.942
Traes_6AL_0D7866801 Triticum aestivum Traes_6AL_0D7866801 I 0.942
AC198937.4_FG005 Zea mays AC198937.4_FG005 I 0.942
Traes_6DL_DA233B945 Triticum aestivum Traes_6DL_DA233B945 I 0.942
Sb07g021400 Sorghum bicolor Sb07g021400 I 0.941
CM1835.10.nc Lotus japonicus CM1835.10.nc I 0.941
Sb02g024593 Sorghum bicolor Sb02g024593 I 0.941
Bra016294 Brassica rapa Bra016294 I 0.941
anac094 Vitis vinifera VIT_14s0108g00860 I 0.940
mgf026196m Mimulus guttatus mgf026196m I 0.940
Ciclev10011891m.g Citrus clementina Ciclev10011891m.g I 0.940
MTR_6g011860 Medicago truncatula MTR_6g011860 I 0.940
Cla010347 Citrullus lanatus Cla010347 I 0.940
SapurV1A.0552s0060 Salix purpurea SapurV1A.0552s0060 I 0.940
Gorai.013G085000 Gossypium raimondii Gorai.013G085000 I 0.939
MDP0000241821 Malus domestica MDP0000241821 I 0.938
MDP0000186765 Malus domestica MDP0000186765 I 0.937
Cucsa.285120 Cucumis sativus Cucsa.285120 I 0.937
F775_04018 Aegilops tauschii F775_04018 I 0.936
PRUPE_ppa022278mg Prunus persica PRUPE_ppa022278mg I 0.935
Pm006506 Prunus mume Pm006506 I 0.935
GLYMA19G02580 Glycine max GLYMA19G02580 I 0.935
GLYMA13G05350 Glycine max GLYMA13G05350 I 0.935
POPTR_0017s11830 Populus trichocarpa POPTR_0017s11830 I 0.933
BRADI3G37067 Brachypodium distachyon BRADI3G37067 I 0.932
POPTR_0004s12850 Populus trichocarpa POPTR_0004s12850 I 0.931
F775_22220 Aegilops tauschii F775_22220 I 0.930
Traes_2BS_2244C64CC Triticum aestivum Traes_2BS_2244C64CC I 0.930
Traes_2DS_E2F2E9EAF Triticum aestivum Traes_2DS_E2F2E9EAF I 0.930
F775_23219 Aegilops tauschii F775_23219 I 0.929
Traes_2DS_8C3F6A558 Triticum aestivum Traes_2DS_8C3F6A558 I 0.929
Traes_2AS_C73DE621D Triticum aestivum Traes_2AS_C73DE621D I 0.929
Traes_5BL_2131D2B17 Triticum aestivum Traes_5BL_2131D2B17 I 0.928
Gorai.004G270400 Gossypium raimondii Gorai.004G270400 I 0.922
SapurV1A.2065s0010 Salix purpurea SapurV1A.2065s0010 I 0.921
Gorai.012G054800 Gossypium raimondii Gorai.012G054800 I 0.921
SapurV1A.2645s0010 Salix purpurea SapurV1A.2645s0010 I 0.921
cassava34069.m1 Manihot esculenta cassava34069.m1 I 0.915
MLOC_60079 Hordeum vulgare MLOC_60079 I 0.913
Lus10030478.g Linum usitatissimum Lus10030478.g I 0.912
chr2.LjT04L10.100.nc Lotus japonicus chr2.LjT04L10.100.nc I 0.911
TRIUR3_04556 Triticum urartu TRIUR3_04556 I 0.911
Bo6g064260 Brassica oleracea Bo6g064260 I 0.911
TRIUR3_04784 Triticum urartu TRIUR3_04784 I 0.910
Gorai.004G270300 Gossypium raimondii Gorai.004G270300 I 0.910
Traes_5AL_F2A49EB8E Triticum aestivum Traes_5AL_F2A49EB8E I 0.910
GLYMA14G03441 Glycine max GLYMA14G03441 I 0.910
Cucsa.265620 Cucumis sativus Cucsa.265620 I 0.909
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.909
Gorai.001G091900 Gossypium raimondii Gorai.001G091900 I 0.909
Traes_2BS_3B6ABF5E6 Triticum aestivum Traes_2BS_3B6ABF5E6 I 0.909
Ciclev10006695m.g Citrus clementina Ciclev10006695m.g I 0.908
orange1.1g046948m.g Citrus sinensis orange1.1g046948m.g I 0.908
Cla005599 Citrullus lanatus Cla005599 I 0.908
Ciclev10005465m.g Citrus clementina Ciclev10005465m.g I 0.908
mgf023960m Mimulus guttatus mgf023960m I 0.907
TRIUR3_04557 Triticum urartu TRIUR3_04557 I 0.907
GLYMA15G40950 Glycine max GLYMA15G40950 I 0.907
cassava20477.m1 Manihot esculenta cassava20477.m1 I 0.906
Pm014764 Prunus mume Pm014764 I 0.906
TCM_001955 Theobroma cacao TCM_001955 I 0.906
Gorai.009G357700 Gossypium raimondii Gorai.009G357700 I 0.906
GLYMA02G45371 Glycine max GLYMA02G45371 I 0.905
POPTR_0007s08340 Populus trichocarpa POPTR_0007s08340 I 0.905
SapurV1A.0354s0230 Salix purpurea SapurV1A.0354s0230 I 0.904
PK01104.1 Cannabis sativa PK01104.1 I 0.902
POPTR_0005s22710 Populus trichocarpa POPTR_0005s22710 I 0.901
Aquca_026_00367 Aquilegia coerulea Aquca_026_00367 I 0.900
30169.m006343 Ricinus communis 30169.m006343 I 0.900
PRUPE_ppa022043mg Prunus persica PRUPE_ppa022043mg I 0.899
SELMODRAFT_15487 Selaginella moellendorffii SELMODRAFT_15487 N 0.898
SELMODRAFT_25673 Selaginella moellendorffii SELMODRAFT_25673 N 0.898
Bra004736 Brassica rapa Bra004736 I 0.898
PDK_20s1311871g001 Phoenix dactylifera PDK_20s1311871g001 I 0.898
Cucsa.118320 Cucumis sativus Cucsa.118320 I 0.898
Cla013684 Citrullus lanatus Cla013684 I 0.897
Solyc02g069960.2 Solanum lycopersicum Solyc02g069960.2 I 0.897
Bra028441 Brassica rapa Bra028441 I 0.897
Cla003401 Citrullus lanatus Cla003401 I 0.897
anac042 Arabidopsis lyrata fgenesh2_kg.4__2460__AT2G43000.1 I 0.895
JUB1 Arabidopsis thaliana AT2G43000 D 0.895
PGSC0003DMG400021119 Solanum tuberosum PGSC0003DMG400021119 I 0.894
Bra000282 Brassica rapa Bra000282 I 0.894
Bo3g036290 Brassica oleracea Bo3g036290 I 0.894
Ciclev10032203m.g Citrus clementina Ciclev10032203m.g I 0.893
orange1.1g021785m.g Citrus sinensis orange1.1g021785m.g I 0.893
Thhalv10027860m.g Eutrema salsugineum Thhalv10027860m.g I 0.892
Ca_15236 Cicer arietinum Ca_15236 I 0.892
anac042 Vitis vinifera VIT_12s0028g00860 I 0.891
GSMUA_Achr5G02170_001 Musa acuminata GSMUA_Achr5G02170_001 I 0.891
anac094 Arabidopsis lyrata Al_scaffold_0007_3733 I 0.891
Bostr.10058s0013 Boechera stricta Bostr.10058s0013 I 0.891
cassava21730.m1 Manihot esculenta cassava21730.m1 I 0.891
Cagra.5905s0003 Capsella grandiflora Cagra.5905s0003 I 0.891
VIT_19s0027g00860 Vitis vinifera VIT_19s0027g00860 I 0.891
Carubv10006906m.g Capsella rubella Carubv10006906m.g I 0.891
Carubv10023730m.g Capsella rubella Carubv10023730m.g I 0.890
Cagra.0202s0012 Capsella grandiflora Cagra.0202s0012 I 0.890
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I 0.890
TRIUR3_04558 Triticum urartu TRIUR3_04558 N 0.890
ANAC094 Arabidopsis thaliana AT5G39820 D 0.889
Bo4g192870 Brassica oleracea Bo4g192870 I 0.888
Bra037743 Brassica rapa Bra037743 I 0.888
mgf019629m Mimulus guttatus mgf019629m N 0.888
Gorai.002G036700 Gossypium raimondii Gorai.002G036700 I 0.887
VIT_19s0027g00870 Vitis vinifera VIT_19s0027g00870 I 0.886
chr3.CM0176.150.nc Lotus japonicus chr3.CM0176.150.nc I 0.885
Lus10031189.g Linum usitatissimum Lus10031189.g I 0.885
Lus10031767.g Linum usitatissimum Lus10031767.g I 0.885
Gorai.004G270200 Gossypium raimondii Gorai.004G270200 N 0.884
POPTR_0002s05820 Populus trichocarpa POPTR_0002s05820 I 0.884
Thhalv10017054m.g Eutrema salsugineum Thhalv10017054m.g I 0.881
F775_01324 Aegilops tauschii F775_01324 I 0.879
LPERR03G30390 Leersia perrieri LPERR03G30390 I 0.879
TCM_032393 Theobroma cacao TCM_032393 I 0.878
Bostr.25993s0479 Boechera stricta Bostr.25993s0479 I 0.876
GRMZM2G112548 Zea mays GRMZM2G112548 I 0.876
BGIOSGA013656 Oryza indica BGIOSGA013656 I 0.874
ONIVA10G12510 Oryza nivara ONIVA10G12510 I 0.874
Eucgr.K01228 Eucalyptus grandis Eucgr.K01228 I 0.874
ORUFI03G37500 Oryza rufipogon ORUFI03G37500 I 0.874
OS03G0777000 Oryza sativa OS03G0777000 I 0.874
Cla023594 Citrullus lanatus Cla023594 I 0.874
ORGLA03G0330500 Oryza glaberrima ORGLA03G0330500 I 0.873
OPUNC03G33030 Oryza punctata OPUNC03G33030 I 0.873
OMERI03G33230 Oryza meridionalis OMERI03G33230 I 0.873
OGLUM03G35790 Oryza glumaepatula OGLUM03G35790 I 0.873
OBART03G36060 Oryza barthii OBART03G36060 I 0.873
POPTR_0005s10080 Populus trichocarpa POPTR_0005s10080 I 0.872
Lus10036117.g Linum usitatissimum Lus10036117.g I 0.872
Lus10007410.g Linum usitatissimum Lus10007410.g I 0.872
gene04766-v1.0-hybrid Fragaria vesca gene04766-v1.0-hybrid I 0.871